biotraj 1.2.0 #42
Workflow file for this run
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| --- | |
| name: "CI & CD" | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| release: | |
| types: | |
| - published | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| CIBW_BUILD: cp310-* cp311-* cp312-* | |
| CIBW_TEST_EXTRAS: test | |
| CIBW_TEST_COMMAND: pytest {project} | |
| CIBW_DEPENDENCY_VERSIONS: "pinned" | |
| # Once GHA and cibuildwheel are updated this can be removed | |
| # mussllinux takes 6+ hrs to build and test so ignore it | |
| CIBW_TEST_SKIP: "*musllinux*" | |
| jobs: | |
| lint: | |
| name: Check code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install ruff | |
| run: pip install .[lint] | |
| - name: Check code formatting | |
| run: ruff format --diff | |
| - name: Lint code base | |
| run: ruff check | |
| generate-wheels-matrix: | |
| name: "Generate wheels matrix" | |
| runs-on: "ubuntu-latest" | |
| outputs: | |
| include: ${{ steps.set-matrix.outputs.include }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install cibuildwheel | |
| # MAKE SURE THIS STAYS IN SYNC WITH THE LOWER GHA cibuildwheel | |
| run: pipx install cibuildwheel==2.19.1 | |
| - id: set-matrix | |
| # Select MacOS13/macos-latest-large for x86_64 Mac runners | |
| # and macos-latest for ARM | |
| # -> macos-latest is not supported for x86_64 | |
| run: | | |
| MATRIX=$( | |
| { | |
| cibuildwheel --print-build-identifiers --platform linux \ | |
| | jq -nRc '{"dist": inputs, "os": "ubuntu-latest"}' \ | |
| && cibuildwheel --print-build-identifiers --platform macos \ | |
| | jq -Rc ' | |
| if (contains("x86_64")) then | |
| {"dist": ., "os": "macos-13"} | |
| else | |
| {"dist": ., "os": "macos-latest"} | |
| end | |
| ' \ | |
| && cibuildwheel --print-build-identifiers --platform windows \ | |
| | jq -nRc '{"dist": inputs, "os": "windows-latest"}' | |
| } | jq -sc | |
| ) | |
| echo "include=$MATRIX" | tee -a $GITHUB_OUTPUT | |
| env: | |
| CIBW_ARCHS_LINUX: "x86_64" | |
| CIBW_ARCHS_MACOS: "x86_64 arm64" | |
| CIBW_ARCHS_WINDOWS: "x86 AMD64" | |
| # Skip musllinux because it takes too long to compile on GHA | |
| # since it is emulated. (6+ hours) | |
| # *note* most of the build time is actually numpy for musllinux | |
| CIBW_SKIP: "*musllinux* *-manylinux_i686 *-musllinux_i686 *-win32 pp*" | |
| test-and-build: | |
| name: "Build & Test" | |
| needs: "generate-wheels-matrix" | |
| strategy: | |
| matrix: | |
| include: ${{ fromJson(needs.generate-wheels-matrix.outputs.include) }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # QEMU enables building/testing for non-native architectures (ie arm64) | |
| # at the cost of speed | |
| - name: Set up QEMU | |
| if: runner.os == 'Linux' | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: all | |
| - name: Build & (optionally) test wheels | |
| # MAKE SURE THIS STAYS IN SYNC WITH THE UPPER pipx call to cibuildwheel | |
| uses: pypa/cibuildwheel@v2.19.1 | |
| with: | |
| only: ${{ matrix.dist }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: release-${{ matrix.dist }} | |
| path: ./wheelhouse/*.whl | |
| make-sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build source distribution | |
| run: pipx run build --sdist | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: release-sdist | |
| path: dist//*.tar.gz | |
| upload-package: | |
| name: Upload package to GitHub Releases & PyPI | |
| permissions: | |
| contents: write | |
| needs: | |
| - lint | |
| - test-and-build | |
| - make-sdist | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: release-* | |
| merge-multiple: true | |
| path: dist | |
| - name: List distributions to be uploaded | |
| run: ls dist | |
| - name: Upload to GitHub Releases | |
| uses: softprops/action-gh-release@v2.0.5 | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| with: | |
| files: dist//* | |
| - name: Upload to PyPI | |
| uses: pypa/gh-action-pypi-publish@v1.9.0 | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| with: | |
| password: ${{ secrets.PYPI_TOKEN }} |