chore(app): add .tool-versions file, update CI tool versions

.github/workflows/ci.yml

@@ -14,7 +14,7 @@ jobs:
       - name: Setup Node
         uses: actions/setup-node@v1
         with:
-          node-version: 12.x
+          node-version: 16.13.1
       - name: Get yarn cache
         id: yarn-cache-dir-path
         run: echo "::set-output name=dir::$(yarn cache dir)"
@@ -40,9 +40,9 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v2
       - name: Setup Python
-        uses: actions/setup-python@v1
+        uses: actions/setup-python@v2
         with:
-          python-version: 3.7
+          python-version: 3.9.17
       - name: Use pip cache
         uses: actions/cache@v2
         with:

.tool-versions

@@ -0,0 +1,3 @@
+yarn 1.22.19
+node 16.13.1
+python 3.9.17

data_pipeline/data_pipeline/config.py

@@ -19,4 +19,4 @@
         value = pipeline_config.get(section, option)
         assert value
 except (configparser.NoOptionError, AssertionError) as exc:
-    raise Exception(f"Missing required configuration '{section}.{option}'") from exc
+    raise ValueError(f"Missing required configuration '{section}.{option}'") from exc

data_pipeline/requirements-dev.txt

@@ -1,57 +1,44 @@
 #
-# This file is autogenerated by pip-compile with python 3.7
-# To update, run:
+# This file is autogenerated by pip-compile with Python 3.9
+# by the following command:
 #
 #    pip-compile requirements-dev.in
 #
-astroid==2.12.12
+astroid==3.3.5
     # via pylint
 black==22.10.0
     # via -r requirements-dev.in
-click==8.1.3
-    # via black
-dill==0.3.6
+click==8.1.7
+    # via
+    #   -c requirements.txt
+    #   black
+dill==0.3.9
     # via
     #   -c requirements.txt
     #   pylint
-importlib-metadata==5.0.0
-    # via click
-isort==4.3.21
+isort==5.13.2
     # via pylint
-lazy-object-proxy==1.8.0
-    # via astroid
-mccabe==0.6.1
+mccabe==0.7.0
     # via pylint
-mypy-extensions==0.4.3
+mypy-extensions==1.0.0
     # via black
-pathspec==0.10.1
+pathspec==0.12.1
     # via black
-platformdirs==2.5.2
+platformdirs==4.3.6
     # via
     #   black
     #   pylint
-pylint==2.15.5
+pylint==3.3.1
     # via -r requirements-dev.in
-tomli==2.0.1
+tomli==2.0.2
     # via
     #   black
     #   pylint
-tomlkit==0.11.6
+tomlkit==0.13.2
     # via pylint
-typed-ast==1.5.4
-    # via
-    #   astroid
-    #   black
-typing-extensions==4.4.0
+typing-extensions==4.12.2
     # via
     #   -c requirements.txt
     #   astroid
     #   black
-    #   importlib-metadata
     #   pylint
-wrapt==1.14.1
-    # via
-    #   -c requirements.txt
-    #   astroid
-zipp==3.10.0
-    # via importlib-metadata

data_pipeline/requirements.in

@@ -1,2 +1,2 @@
-hail
+hail==0.2.126
 tqdm