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Merge pull request #216 from camicroscope/develop
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For 3.12.0
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birm authored May 2, 2024
2 parents 218d973 + cf2a5ff commit 03fa45b
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Showing 6 changed files with 55 additions and 13 deletions.
11 changes: 7 additions & 4 deletions caMicroscope.yml
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,9 @@ services:
- ./db:/data/db
back:
build:
context: "https://github.com/camicroscope/caracal.git#v3.11.0"
context: "https://github.com/camicroscope/caracal.git#v3.12.0"
args:
viewer: "v3.11.0"
viewer: "v3.12.0"
depends_on:
- "mongo"
ports:
Expand Down Expand Up @@ -49,7 +49,7 @@ services:
volumes:
- ./images/:/images/
loader:
build: "https://github.com/camicroscope/SlideLoader.git#v3.11.0"
build: "https://github.com/camicroscope/SlideLoader.git#v3.12.0"
container_name: ca-load
restart: always
logging:
Expand All @@ -62,7 +62,10 @@ services:
DICOM_PORT: "11112"
DICOM_UI_PORT: "8042"
dicomsrv:
build: "https://github.com/camicroscope/dicomsrv.git#v3.11.0"
build:
context: "https://github.com/camicroscope/dicomsrv.git#v3.11.1"
args:
indexer: "v3.12.0"
container_name: ca-dicomsrv
restart: unless-stopped
stdin_open: true
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4 changes: 4 additions & 0 deletions config/contentSecurityPolicy.json
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@
"cdn.datatables.net",
"maxcdn.bootstrapcdn.com"
],
"connectSrc": [
"'self'",
"*"
],
"styleSrc": [
"'self'",
"'unsafe-inline'",
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14 changes: 13 additions & 1 deletion config/routes.json
Original file line number Diff line number Diff line change
Expand Up @@ -114,7 +114,13 @@
"route":"/data/Mark/find",
"method":"get",
"handlers":[
{"function":"mongoFind", "args": ["camic", "mark"]}
{"function":"mongoPaginatedFind", "args": ["camic", "mark"]}
]
},{
"route":"/data/Mark/count",
"method":"get",
"handlers":[
{"function":"mongoCount", "args": ["camic", "mark"]}
]
},{
"route":"/data/Mark/post",
Expand Down Expand Up @@ -147,6 +153,12 @@
"handlers":[
{"function":"mongoDistinct", "args": ["camic", "mark", "provenance.analysis"]}
]
},{
"route":"/data/Mark/provenances",
"method":"get",
"handlers":[
{"function":"mongoDistinct", "args": ["camic", "mark", "provenance"]}
]
},{
"route":"/data/Mark/multi",
"method":"post",
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3 changes: 3 additions & 0 deletions develop.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,9 @@ services:
- "mongo"
ports:
- "4010:4010"
- "9229:9229"
container_name: ca-back
command: node --inspect=0.0.0.0:9229 --prof caracal.js
volumes:
- ./config/login.html:/src/static/login.html
- ./jwt_keys/:/src/keys/
Expand All @@ -28,6 +30,7 @@ services:
MONGO_URI: "mongodb://ca-mongo"
DISABLE_SEC: "true"
ALLOW_PUBLIC: "true"
NUM_THREADS: 1
iip:
build: "https://github.com/camicroscope/iipImage.git#develop"
container_name: ca-iip
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28 changes: 24 additions & 4 deletions kc_caMicroscope.yml
Original file line number Diff line number Diff line change
Expand Up @@ -51,9 +51,9 @@ services:
- ./db:/data/db
back:
build:
context: "https://github.com/camicroscope/caracal.git#v3.10.0"
context: "https://github.com/camicroscope/caracal.git#v3.12.0"
args:
viewer: "v3.10.1"
viewer: "v3.12.0"
depends_on:
- "mongo"
ports:
Expand All @@ -76,7 +76,7 @@ services:
MONGO_URI: "mongodb://ca-mongo"
GENERATE_KEY_IF_MISSING: "true"
iip:
image: camicroscope/iipimage:version-3.10.2
image: camicroscope/iipimage:version-3.11.0
container_name: ca-iip
logging:
options:
Expand All @@ -86,7 +86,7 @@ services:
volumes:
- ./images/:/images/
loader:
build: "https://github.com/camicroscope/SlideLoader.git#v3.10.0"
build: "https://github.com/camicroscope/SlideLoader.git#v3.12.0"
container_name: ca-load
restart: always
logging:
Expand All @@ -95,3 +95,23 @@ services:
max-size: "10m"
volumes:
- ./images/:/images/
environment:
DICOM_PORT: "11112"
DICOM_UI_PORT: "8042"
dicomsrv:
build: "https://github.com/camicroscope/dicomsrv.git#v3.11.1"
container_name: ca-dicomsrv
restart: unless-stopped
stdin_open: true
tty: true
ports:
- "8042:8042"
- "11112:11112"
volumes:
- ./jwt_keys/:/root/keys/
- ./images/:/images/
- ./config/OrthancConfiguration.json:/root/src/Configuration.json
environment:
DICOM_PORT: "11112"
DICOM_UI_PORT: "8042"
CARACAL_BACK_HOST_PORT: "ca-back:4010"
8 changes: 4 additions & 4 deletions quip-pathdb.yml
Original file line number Diff line number Diff line change
Expand Up @@ -15,9 +15,9 @@ services:
- ./images/:/data/images/
back:
build:
context: "https://github.com/camicroscope/caracal.git#v3.11.0"
context: "https://github.com/camicroscope/caracal.git#v3.12.0"
args:
viewer: "v3.11.0"
viewer: "v3.12.0"
depends_on:
- "mongo"
ports:
Expand All @@ -37,7 +37,7 @@ services:
build:
context: "https://github.com/SBU-BMI/PathDB.git#2.0.0"
args:
viewer: "v3.11.0"
viewer: "v3.11.1"
container_name: quip-pathdb
restart: unless-stopped
ports: ["443:443","80:80"]
Expand All @@ -61,7 +61,7 @@ services:
volumes:
- ./data:/data
heatmaploader:
build: "https://github.com/SBU-BMI/uploadHeatmaps.git#v1.5.4"
build: "https://github.com/SBU-BMI/uploadHeatmaps.git#v1.5.5"
container_name: quip-hmloader
volumes:
- ./data:/mnt/data/
Expand Down

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