2.0.0-dev0

What's Changed

• cicd: update sc_product_id by @korikuzma in #228
• build!: update civicpy build to 3.x.x by @korikuzma in #233
• refactor: cleanup harvester classes by @korikuzma in #234
• chore: remove requirements files by @korikuzma in #239
• feat!: update transformers to use vrs 2-alpha and gk-pilot schemas by @korikuzma in #245
• refactor!: fix class name casing by @korikuzma in #247
• feat: add support for TherapeuticSubstituteGroup in CIViC by @korikuzma in #249
• feat: add support for CombinationTherapy by @korikuzma in #251
• fix: civic variant aliases should be a list + pydantic warning by @korikuzma in #252
• change: snp ids should not be in civic aliases during transform by @korikuzma in #257
• build: update thera-py + fix TherapyQueryHandler instantiation by @korikuzma in #259
• fix: key error in MoaHarvester _get_feature by @korikuzma in #258
• change: snp ids should not be in civic mp aliases during transform by @korikuzma in #260
• test: update moa source 44 title by @korikuzma in #262
• tests: update civic + moa test data by @korikuzma in #276
• feat: include additional therapy/disease normalizer data in CDM by @korikuzma in #288
• build!: update dependencies and ga4gh digests by @korikuzma in #300
• test: update civicpy cache data by @korikuzma in #302
• chore: remove unused delta class by @korikuzma in #306
• feat!: update database to reflect schema changes by @korikuzma in #266
• cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #307
• fix: creating location parameterized query string by @korikuzma in #310
• feat!: update /search/studies endpoint by @korikuzma in #279
• cicd: update elastic beanstalk commands by @korikuzma in #280
• Add lab template CICD actions by @jsstevenson in #297
• build: configure setuptools in pyproject.toml by @jsstevenson in #298
• style: use ruff by @jsstevenson in #313
• cicd: adjust installation checks by @jsstevenson in #316
• test: fix test data dir + update param name change by @korikuzma in #319
• chore: remove unused files by @korikuzma in #321
• fix: add support for civic ash source type by @korikuzma in #323
• chore: remove analysis dir by @korikuzma in #320
• feat: use MOA representative coordinate to create PSC members by @korikuzma in #312
• cicd: add action for closing issue when merged into staging by @korikuzma in #325
• cicd: fix elastic beanstalk deployment by @korikuzma in #326
• fix: replace StrEnum with Enum by @korikuzma in #328
• refactor!: update cli by @korikuzma in #324

Full Changelog: 1.2.0-dev0...2.0.0-dev0

1.2.0-dev0

What's Changed

• feat: add oncokb as a source (#170) by @korikuzma in #211
• build!: update dependencies by @korikuzma in #217
• refactor: remove LAST_UPDATED by @korikuzma in #221
• ci: add GH action for installing deps + remove requirements by @korikuzma in #223
• chore: update elastic beanstalk commands by @korikuzma in #224

Full Changelog: v1.1.0...1.2.0-dev0

v1.1.0

What's Changed

• Bump lxml from 4.9.0 to 4.9.1 by @dependabot in #177
• docs: update readme and add readme for cli by @korikuzma in #176
• ci: bump action versions by @jsstevenson in #195
• build!: pin dependencies by @korikuzma in #201
• Staging by @korikuzma in #202

Full Changelog: v1.1.0a9...v1.1.0

v1.1.0a9: Merge pull request #175 from cancervariants/staging

• Update variation normalizer + other dependencies

v1.1.0a8: Merge pull request #173 from cancervariants/staging

• Update requirements to remove security vulnerabilities

v1.1.0a7: Merge pull request #169 from cancervariants/issue-168

• Add transformed regulatory_approval field from thera-py to therapy descriptor extensions

v1.1.0a6: Merge pull request #167 from cancervariants/staging

• Clean up CLI log/click messages
• Update dependencies
  • Variation Normalizer now uses latest version of MANE transcripts

v1.1.0a5

• Bump jupyter-server from 1.13.5 to 1.15.4

v1.1.0a4

• Replace response_datetime with last_updated in ServiceMeta
• Remove extra node from diagnostic propositions
• Created versioned data files
• Add url to openapi contact info
• Remove duplicate descriptors from response
• Always enable Try it out param in FastAPI
• Use hashed digests for arbitrary ID values instead of incremental numbering (eg for Propositions and some Documents)
• Updated CLI option names + added option to load single CDM file
• Refactor tests to improve runtime