Research Software Engineer training materials

Below you'll find an (work in progress) curated list of research software engineering training material. All material is:

1. In a GitHub or GitLab repository
2. is a hands-on workshops
3. is open and free to all researchers

Acronyms:

TUDelft: Technical University of Delft (NL)
SIB SWISS: Swiss Institute of Bioinformatics (CH)

Virtual collaborative whiteboard tool: Link to excalidraw file - Brainstorming session 09.11.2023

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Foundational

Foundational workshops serve as the cornerstone for a wide array of hands-on workshop applications, providing a versatile starting point for specialized lessons:

• CodeRefinery
• Software Carpentry Workshop with Python
• SIB Swiss First steps with UNIX in Life Science

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Essentials

• 1. CodeRefinery
• 2. Software Carpentry Workshop with Python
• 3. SIB Swiss First steps with UNIX in Life Science
• 4. TUDelft - Version control & collaborative development for research software
• 5. eScience - Good Practices in Research Software Development
• 6. SIB Swiss - Version control with Git

Intermediate

• 7. Carpentries Incubator - Intermediate Research Software Development
• 8. eScience Center - Intermediate Research Software Development with python
• 9. SIB Swiss - Intermediate python courses
• 10. SIB Swiss - Best practices in Programming

Specialised

• 11. SIB Swiss - Docker and Singularity for Reproducible Research: Getting Started with Containers
• 12. SIB Swiss - Introduction to Contaniers and Snakemake for Reproducible Research
• 13. eScience Center - Reproducible Computational Environments Using Containers
• 14. Carpentries Incubator - Reproducible Computational Environments Using Containers: Introduction to Docker
• 15. TUD - FAIR4RS: FAIR Software Program
• 16. US-RSE'23 Tutorials