MaSIF colab

This repo contains a dMaSIF implementation for google colab. For now we only have a dMaSIF site implementation for visualizing protein binding sites. We are working on other implementations, keep an eye on this repo!

Link to the dMaSIF_colab

Available dMaSIF models

Models	Resolution	Dimensions	Layers	Radius	ROC/AUC
dMaSIF site	1.0 A	16	3	12 A	0.87
dMaSIF site	1.0 A	16	3	9 A	0.87
dMaSIF site	0.7 A	16	3	12 A	0.88
dMaSIF site	0.7 A	16	3	9 A	0.88

Models:

• dMaSIF site identifies protein–protein interaction sites.
• dMaSIF search (COMING SOON!) predicts protein-protein complexes.

Resolution:

• The distance between points in the pointcloud in Ångström (lower is higher resolution)

Dimensions:

• The number of embedding dimensions

Layers:

• Number of convolutional layers

Radius:

• Radius to use for the convolution

ROC/AUC:

• Performance measure, higher is better.

How to run dMaSIF locally

• You can install and run dMaSIF locally throug the original dMaSIF repository.

How to reference this work

• Sverrisson, F., Feydy, J., Correia, B. E., & Bronstein, M. M. (2021). Fast end-to-end learning on protein surfaces. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 15272-15281).