BioPlexPy

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Python-side access to PPI data from Gygi lab

Citation

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If you use the BioPlexPy package in published research, please cite:

Ludwig Geistlinger, Roger Vargas Jr, Tyrone Lee, Joshua Pan, Edward Huttlin, Robert Gentleman (2023) BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinformatics. doi: 10.1093/bioinformatics/btad091.

Installation

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The package can be installed through pypi or through github

pip install bioplexpy or pip install git+https://github.com/ccb-hms/BioPlexPy.git#egg=BioPlexPy

Usage

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See the BioPlex examples notebook for basic usage and how to obtain BioPlex datasets.

https://bioplexpy.readthedocs.io/en/latest/

Running Tests

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• python -m doctest BioPlexPy/ to run the respective test for the file Warning: By default, doctests will not print anything if tests are successful. Add the -v option to print verbose output.