Data Insights Projects

A Probabilistic Framework for RNA Velocity Statistical Tests Using Pyro

Luca Pinello, Eli Bingham, Gioele La Manno

Github repo:

Benchmarking of scRNA-Seq to Improve Human Health

Elizabeth Purdom

Github repo:

Beyond Data Repositories: Decentralized Analysis of the Human Cell Atlas

Fabian Theis, Nir Yosef

Github repo:

Deep and Standardized Single-Cell Annotations with CITE-seq

Evan Newell, Raphael Gottardo

Github repo:

Efficient Data Structures for Single-Cell Data Integration

Timothy Triche

Github repo:

Enhancing Rigor and Reliability of Single-Cell Data Science

Jingyi Jessica Li

Github repo: https://github.com/JSB-UCLA

Gene Set Enrichment Analysis for Single-Cell Data (scGSEA)

Jill Mesirov

Github repo:

Harmony Powers Robust and Scalable Single-Cell Integration

Ilya Korsunsky, Soumya Raychaudhuri, Martin Hemberg

Github repo:

Improving Product-space Forms for Single-Cell Data Representation and Understanding

Olgica Milenkovic, Minji Kim

Github repo:

Integrating Multiple Datasets to Better Understand Human Reproductive Function

Roser Vento-Tormo, Sarah Teichmann, Luz Garcia-Alonso

Github repo:

Mapping Enhancer-gene Regulation in Various Cell Types

Jesse Engreitz

Github repo:

MetaPlaq: Integrative Single-Cell Meta-Analysis for Atherosclerosis

Clint Miller, Chongzhi Zang, Sander W. van der Laan

Github repo:

Methods and Software for Decontamination of Single-Cell Data

Joshua Campbell, Masanao Yajima

Github repo:

Multi-omics Integration with Batch-adversarial Neural Networks

Uwe Ohler

Github repo:

Multiscale Data Integration for Single-Cell Spatial Genomics

Shila Ghazanfar

Github repo:

Single-Cell T-cell Receptor and Expression Grouped Ontologies (STEGO)

Pieter Meysman, Kris Laukens, Benson Ogunjimi

Github repo:

Statistic Methods to Illuminate Splicing and RNA Regulation in Single-Cell Biology

Julia Salzman, David Tse

Github repo:

Statistical Methods to Investigate Phenotypic Variation

Sunduz Keles, Emery Bresnick

Github repo:

Understanding the History of Mutations and Cancer Cells

Alexander Tsankov, Rosa Karlic

Github repo:

Unraveling Immunogenomic Diversity in Single-Cell Data

Katharina Imkeller, Federico Marini

Github repo:

---

---

Code of Conduct

This project adheres to the Contributor Covenant code of conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to opensource@chanzuckerberg.com.

License: MIT

Security