Updating nhcommons dependencies (#1302)

* Updating nhcommons dependencies

* Updating data-workflow dependencies

* Updating nhcommons linter

* Upgrading ubuntu distros

* Excluding tests from all linters

.github/workflows/backend-tests.yml

@@ -26,7 +26,7 @@ jobs:
   # Runs pytest for backend code
   tests:
     name: Unit test with pytest
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     steps:
       - name: Checkout Repo
@@ -71,6 +71,6 @@ jobs:
 
       - uses: psf/black@stable
         with:
-          options: "--check --diff --color --verbose"
+          options: "--check --diff --color --verbose --extend-exclude '.*/tests/.*'"
           version: "~= 23.1.0"
           src: "./backend"

.github/workflows/dataworkflow-tests.yml

@@ -26,7 +26,7 @@ jobs:
   # Runs pytest for data-workflows code
   tests:
     name: Unit test with pytest
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     steps:
       - name: Checkout Repo
@@ -69,6 +69,6 @@ jobs:
 
       - uses: psf/black@stable
         with:
-          options: "--check --diff --color --verbose"
+          options: "--check --diff --color --verbose --extend-exclude '.*/tests/.*'"
           version: "~= 23.1.0"
           src: "./data-workflows"

.github/workflows/nh-commons-tests.yml

@@ -67,6 +67,6 @@ jobs:
 
       - uses: psf/black@stable
         with:
-          options: "--check --diff --color --verbose"
+          options: "--check --diff --color --verbose --extend-exclude '.*/tests/.*'"
           version: "~= 23.1.0"
           src: "./napari-hub-commons"

.github/workflows/plugins-tests.yml

@@ -72,6 +72,6 @@ jobs:
 
       - uses: psf/black@stable
         with:
-          options: "--check --diff --color --verbose"
+          options: "--check --diff --color --verbose --extend-exclude '.*/tests/.*'"
           version: "~= 23.1.0"
           src: "./plugins"

data-workflows/requirements.txt

@@ -1,3 +1,3 @@
-boto3==1.26.147
+boto3>=1.33.2
 snowflake-connector-python==3.0.2
 ./../napari-hub-commons

napari-hub-commons/requirements.txt

@@ -1,8 +1,8 @@
-boto3>=1.26.77
+boto3>=1.33.2
 bs4==0.0.1
 cffconvert==2.0.0
 gunicorn==20.1.0
 Markdown==3.4.1
-pynamodb==5.4.1
+pynamodb==5.5.1
 python-slugify==8.0.1
 pyyaml==6.0

napari-hub-commons/src/nhcommons/utils/github_adapter.py

@@ -9,7 +9,7 @@
 _DEFAULT_DESCRIPTION = (
     "The developer has not yet provided a napari-hub " "specific description."
 )
-_HUB_CONFIG_KEYS = {'labels'}
+_HUB_CONFIG_KEYS = {"labels"}
 
 
 def is_valid_repo_url(url: str) -> bool: