feat: first version in the new repository

README.md

@@ -11,22 +11,12 @@ Disambiguate reads that were mapped to multiple references.
 
 ![Torres del Paine](.github/img/cover.jpg)
 
-#### Installation
-
 Install with the Conda or Mamba package manager after setting your [Bioconda channels](https://bioconda.github.io/user/install.html#set-up-channels):
 
 ```text
 ❯ conda install neodisambiguate
 ```
 
-#### Features
-
-- Accepts SAM/BAM sources of any sort order
-- Will disambiguate an arbitrary number of BAMs, all aligned to different references
-- Writes the ambiguous alignments to a separate directory
-- Extensible implementation which supports alternative disambiguation strategies
-- Benchmarks show high accuracy: [Click Here](benchmarks/disambiguate.md)
-
 #### Introduction
 
 Disambiguation of aligned reads is performed per-template and all information across primary, secondary, and supplementary alignments is used as evidence.
@@ -41,6 +31,14 @@ Input BAMs of arbitrary sort order are accepted, however, an internal sort to qu
 All output BAM files will be written in the same sort order as the input BAM files.
 Although paired-end reads will give the most discriminatory power for disambiguation of short-read sequencing data, this tool accepts paired, single-end (fragment), and mixed pairing input data.
 
+#### Features
+
+- Accepts SAM/BAM sources of any sort order
+- Will disambiguate an arbitrary number of BAMs, all aligned to different references
+- Writes the ambiguous alignments to a separate directory
+- Extensible implementation which supports alternative disambiguation strategies
+- Benchmarks show high accuracy: [Click Here](benchmarks/disambiguate.md)
+
 #### Command Line Usage
 
 ```bash