v1.2.0 🌈

Version 1.2.0

The main changes in this version are:

• Installation using only conda-forge dependencies and simplified installation instructions (on Linux and Mac OS)
• Fix annotation in napari widgets with scale factors thanks to @psobolewskiPhD
• Support for several parameter-efficient training methods thanks to @caroteu and @anwai98

Changes

• Bump to version 1.2.0 @constantinpape (#816)
• Merge dev into master @constantinpape (#815)
• Update conda environments and CI @constantinpape (#814)
• Allow flexible choice between metrics for grid-search @anwai98 (#812)
• Refactor peft test @constantinpape (#810)
• Add SSF method @anwai98 (#727)
• Minor update to interactive multi-dim segmentation functionality @anwai98 (#802)
• Add AdaptFormer @caroteu (#741)
• Add logo to doc @anwai98 (#809)
• [Enh] Handle segmenting image layers that have non-1 layer.scale @psobolewskiPhD (#804)
• Add SAM export scripts in bioengine format @anwai98 (#803)
• Update start_page.md @constantinpape (#807)
• Update README.md @constantinpape (#806)
• Minor fix to caching embeddings in AIS evaluation @anwai98 (#800)
• Upstream dev with master @anwai98 (#799)
• Minor update to path for storing iterative prompting results @anwai98 (#797)
• Add tooltip mentions in FAQ section @anwai98 (#796)
• Minor fix to finetuning UI tooltip @anwai98 (#795)
• Ensure segmentation data type after connected components @anwai98 (#783)
• Fix choice of automatic segmentation mode in CLI @anwai98 (#788)
• Minor update to avoid caching embeddings in evaluation @anwai98 (#782)
• Add example script for automatic segmentation @anwai98 (#781)
• Minor fix to casting masks in AMG post-processing @anwai98 (#780)
• Add documentation for micro-sam CLIs @anwai98 (#777)
• Minor fixes to automatic segmentation notebook @anwai98 (#779)
• Add LoRA scaling factor @caroteu (#770)
• Remove merge conflict artifacts @anwai98 (#774)
• Fix automatic segmentation CLI - return tiling window segmeter @anwai98 (#767)
• Update workshop @constantinpape (#764)
• Fix training UI @anwai98 (#763)
• Make caching embeddings optional for evaluation scripts @anwai98 (#759)
• Add latest release overview to doc @anwai98 (#761)
• Add suggestion to transfer downloaded checkpoints and rename filenames @anwai98 (#758)
• Add release overview to doc @anwai98 (#757)
• Updates for the workshop @constantinpape (#755)
• Minor updates to finetuning notebook @anwai98 (#753)
• Minor updates to workshop documents @anwai98 (#752)