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Maintenance, bug fixes and enhancement of the Bidsappmanager #33
Maintenance, bug fixes and enhancement of the Bidsappmanager #33
Conversation
… of outputputs in the GUI [skip ci]
… bidsapp execution
… other and with python 2.7 [skip ci]
Installation of BIDSAppmanager fully (creation of new conda environment) and successfully tested on Ubuntu 16.04 (Commit 5a2e00c). |
Tasked before merged:
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Hello Sébastien, I tried the newest method(1~5) to introduce the Connectome Mapper BIDS App Manager noted on the post below: I'd appreciate it if you look see the logs(screenshots) attached and give adivice. Here is version information. And results of conda list: I'm deeply grateful for your constant support. Best regards, |
Hi @Kenji-Hirose, I have a good news, I made an end of the By checking the new connectomemapper3/cmp/pipelines/common.py Lines 10 to 22 in e3d1554
To install the new latest version (
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Hello Sébastien, Thank you for your very quick response! I tried the procedure you mentioned(first 2 screenshots), The branch would be correct, I guess(the last screenshot). Do you have any idea for this?? Many thanks. Best regards, |
@Kenji-Hirose Forgot to add, you would need to also reinstall CMP3 with the GUI:
And then |
This PR is dedicated to the upcoming beta-RC2 release. It includes in particular the following changes:
New feature
<output_dir>/sub-<label>(/ses<label>)/anat
folder, recognized by their_stats.tsv
file name suffix. (Computes parcellation ROI volumes #13)Upgrade
Improved replicability
MATRIX_RNG_SEED
environment variable (used by MRtrix) and seed for the numpy random number generator (numpy.random.seed()
)Bug fixes
inspect_outputs()
ofConnectomeStage
for the output inspector window of the cmpbidsappmanager (GUI)fury
andvtk
) that fixes dipy_CSD execution error when trying to import module actor from dipy.viz to save the results in a png (dipy_CSD executes with error #36)Code refactoring
cmtklib/functionalMRI.py
.rsfmri_conmat
) moved tocmtklib/connectome.py