repro-fdtd1d

• Slides (ppt, pdf) for the 3rd day (4 August) of the FSCI 2021 W22 course: Research Reproducibility in Theory and Practice (biomedical focus). In this repository:

  • Notebook_Demonstration.ipynb is a demonstration notebook
  • Files in bin and script can be called by a terminal running inside Binder as described in the slides

• Slides (ppt, pdf) for the 3rd day (12 August) of the FSCI 2020 W20 course: Research Reproducibility in Theory and Practice (Examples and Focus on Biological Sciences). In this repository:

  • Notebook_Demonstration.ipynb is a demonstration notebook
  • Files in bin and script can be called by a terminal running inside Binder as described in the slides

• Example Jupyter notebook for the 2nd day of the FSCI 2018 AM8 course on reproducibility and 2nd day of the FSCI 2019 AM3 course on reproducibility

  • Notebook_Demonstration.ipynb is a demonstration notebook
  • Makes use of a data set
  • Also see slides 14 - 19 of https://speakerdeck.com/jhermann/jupyterhub-and-jupyter-notebook-a-view-under-the-hood?slide=14 for some info on the relationship between notebooks and various means of using/storing them
  • and this image

• Programs and examples for the computational reproducibility day of the FSCI 2018 AM8 course on reproducibility and FSCI 2019 AM3 course on reproducibility

  • fdtd_intro.ipynb is a Jupyter notebook that explains the theory and math behind the finite-difference time-domain method in 1 dimension, lightly adapted from: Understanding the Finite-Difference Time-Domain Method, John B. Schneider, http://www.eecs.wsu.edu/~schneidj/ufdtd, 2010.
  • fdtd1d.c is a C program that implements a 1D FDTD simulation of free space, and has a line that can be uncommented to insert a glass slab into the space
  • fdtd1d.py is a python program that is basically the same as the C program
  • fdtd1d.ipynb is a Jupyter notebook that steps through a bunch of examples of a 1D fdtd simulation and does some "science"