bring back inSchema #69
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| on: | |
| push: | |
| branches: [main, master, test, develop] | |
| pull_request: | |
| branches: [main, master, develop] | |
| name: sqlserver-odbc-test | |
| jobs: | |
| Postgres-test: | |
| # if: github.repository == 'darwin-eu/CDMConnector' | |
| runs-on: ubuntu-latest | |
| container: | |
| image: executionengine.azurecr.io/darwin-base:v0.3 | |
| env: | |
| CDM5_SQL_SERVER_USER: ${{ secrets.CDM5_SQL_SERVER_USER }} | |
| CDM5_SQL_SERVER_PORT: ${{ secrets.CDM5_SQL_SERVER_PORT }} | |
| CDM5_SQL_SERVER_PASSWORD: ${{ secrets.CDM5_SQL_SERVER_PASSWORD }} | |
| CDM5_SQL_SERVER_SERVER: ${{ secrets.CDM5_SQL_SERVER_SERVER }} | |
| CDM5_SQL_SERVER_HOST: ${{ secrets.CDM5_SQL_SERVER_HOST }} | |
| CDM5_SQL_SERVER_DBNAME: ${{ secrets.CDM5_SQL_SERVER_DBNAME }} | |
| CDM5_SQL_SERVER_CDM_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_CDM_SCHEMA }} | |
| CDM5_SQL_SERVER_OHDSI_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_OHDSI_SCHEMA }} | |
| CDM5_SQL_SERVER_SCRATCH_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_SCRATCH_SCHEMA }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| SQL_SERVER_DRIVER: "ODBC Driver 17 for SQL Server" # used in the docker image | |
| TESTTHAT_CPUS : 1 | |
| name: SQL Server test (ODBC driver) | |
| strategy: | |
| fail-fast: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install R packages | |
| run: | | |
| print(getwd()) | |
| print(list.files()) | |
| install.packages("devtools", repos = "https://cloud.r-project.org/") | |
| install.packages("omopgenerics", repos = "https://cloud.r-project.org/") | |
| install.packages("palmerpenguins", repos = "https://cloud.r-project.org/") | |
| install.packages("tictoc", repos = "https://cloud.r-project.org/") | |
| shell: Rscript {0} | |
| - name: Run tests on SQL Server with odbc driver | |
| run: R -e 'devtools::install(); withr::with_envvar(new = c("CI_TEST_DB" = "postgres"), testthat::test_local())' | |