Merge branch 'main' of github.com:darwin-eu/CDMConnector #46

	on:
	push:
	branches: [main, master, test]
	pull_request:
	branches: [main, master]

	name: postgres-test

	jobs:
	Postgres-test:
	# if: github.repository == 'darwin-eu/CDMConnector'
	runs-on: ubuntu-latest
	container:
	image: executionengine.azurecr.io/darwin-base:v0.2
	env:
	CDM5_POSTGRESQL_USER: ${{ secrets.CDM5_POSTGRESQL_USER }}
	CDM5_POSTGRESQL_PORT: ${{ secrets.CDM5_POSTGRESQL_PORT }}
	CDM5_POSTGRESQL_PASSWORD: ${{ secrets.CDM5_POSTGRESQL_PASSWORD }}
	CDM5_POSTGRESQL_SERVER: ${{ secrets.CDM5_POSTGRESQL_SERVER }}
	CDM5_POSTGRESQL_HOST: ${{ secrets.CDM5_POSTGRESQL_HOST }}
	CDM5_POSTGRESQL_DBNAME: ${{ secrets.CDM5_POSTGRESQL_DBNAME }}
	CDM5_POSTGRESQL_CDM_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_CDM_SCHEMA }}
	CDM5_POSTGRESQL_OHDSI_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_OHDSI_SCHEMA }}
	CDM5_POSTGRESQL_SCRATCH_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_SCRATCH_SCHEMA }}
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	name: Postgres test (RPostgres driver)

	strategy:
	fail-fast: true

	steps:
	- uses: actions/checkout@v2

	- name: Run a simple shell command
	run: ls

	- name: Run one R command
	run: R -e "getwd()"

	- name: Run several R commands
	run: \|
	print(getwd())
	print(list.files())
	shell: Rscript {0}

	- name: Run tests on postgres with RPostgres driver
	run: R -e 'withr::with_envvar(new = c("CI_TEST_DB" = "postgres"), testthat::test_local())'

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