read also upper case achilles tables (#407) #48
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| on: | |
| push: | |
| branches: [main, master, test] | |
| pull_request: | |
| branches: [main, master] | |
| name: postgres-test | |
| jobs: | |
| Postgres-test: | |
| # if: github.repository == 'darwin-eu/CDMConnector' | |
| runs-on: ubuntu-latest | |
| container: | |
| image: executionengine.azurecr.io/darwin-base:v0.2 | |
| env: | |
| CDM5_POSTGRESQL_USER: ${{ secrets.CDM5_POSTGRESQL_USER }} | |
| CDM5_POSTGRESQL_PORT: ${{ secrets.CDM5_POSTGRESQL_PORT }} | |
| CDM5_POSTGRESQL_PASSWORD: ${{ secrets.CDM5_POSTGRESQL_PASSWORD }} | |
| CDM5_POSTGRESQL_SERVER: ${{ secrets.CDM5_POSTGRESQL_SERVER }} | |
| CDM5_POSTGRESQL_HOST: ${{ secrets.CDM5_POSTGRESQL_HOST }} | |
| CDM5_POSTGRESQL_DBNAME: ${{ secrets.CDM5_POSTGRESQL_DBNAME }} | |
| CDM5_POSTGRESQL_CDM_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_CDM_SCHEMA }} | |
| CDM5_POSTGRESQL_OHDSI_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_OHDSI_SCHEMA }} | |
| CDM5_POSTGRESQL_SCRATCH_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_SCRATCH_SCHEMA }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| name: Postgres test (RPostgres driver) | |
| strategy: | |
| fail-fast: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Run a simple shell command | |
| run: ls | |
| - name: Run one R command | |
| run: R -e "getwd()" | |
| - name: Run several R commands | |
| run: | | |
| print(getwd()) | |
| print(list.files()) | |
| shell: Rscript {0} | |
| - name: Run tests on postgres with RPostgres driver | |
| run: R -e 'withr::with_envvar(new = c("CI_TEST_DB" = "postgres"), testthat::test_local())' | |