dj-cookiecutter

Drew Yang @ DataJoint | 2022.02.18

Joseph Burling @ DataJoint | 2022.04.08

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This is a customized Cookiecutter python project template that you can generate an inital python project directory structure and common-used files

• Cookiecutter Github
• Cookiecutter Docs

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Cookiecutter usage and installation

Installation

pip install -U "git+https://github.com/cookiecutter/cookiecutter" tomli pyyaml

Basic usage

Use the cookiecutter command-line interface to generate new projects. You need to reference the name of the template folder and point to a GitHub repo or a local directory that holds the template. You will be asked to set a value for each variable, or you can skip (press ENTER) to use the default values.

Example, use the template corresponding to the folder template-name and point to the GitHub repo containing the templates at git@github.com:... (you can also use gh: as a shorthand for git@github.com:).

Note: Make sure the cookiecutter cli can be found, activating the environment if necessary!

cookiecutter --directory template-name git@github.com:datajoint-company/dj-cookiecutter.git

A python project will be generated at ~/.../my-current-dir/project-name/, where project-name is determined based on your input to the questions asked.

If there is an existing, local cookiecutter template, e.g., at ./dj-cookiecutter, you can use that path instead of the GitHub repo url.

cookiecutter --directory template-name ./dj-cookiecutter

Specifying additional options

To generate a project to a specific directory: ./Projects

cookiecutter --directory template-name -o ./Project gh:datajoint-company/dj-cookiecutter

Files will be in ./Projects/project_name.

If you have already started working on your project and there are existing files.

cookiecutter --directory template-name --overwrite-if-exists gh:datajoint-company/dj-cookiecutter 

or ...

cookiecutter --directory template-name --skip-if-file-exists gh:datajoint-company/dj-cookiecutter

This repo uses multiple cookiecutter templates, requiring the --directory option. To specifiy a different template, e.g., another-template:

cookiecutter --directory another-template gh:datajoint-company/dj-cookiecutter 

Note: cookiecutter will cache/clone this specified template repo to your user directory's ~/.cookiecutters

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DataJoint Templates

• datajoint-workflow by @Yambottle, @iamamutt
• element-example created as initial examples for science-team, welcome changes or new templates for your own requirements
• basic-package by @iamamutt

Note: the datajoint-workflow and basic-package templates require cookiecutter>=2.0.0

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General cookiecutter Overview

The cookiecutter cmd will find the cookiecutter.json file under the specified template directory whether it's on local or on github, and take each key-value pair as {variable : default value}. It will ask you to input a value for each variable to replace the default value. Then, it will use Jinja to embed each variable to each file name, folder name or file content that refered it.

Example context of cookiecutter.json.

{
    "author_name":  # author name in setup.py and LICENSE
    "author_email": # author email in setup.py
    "project_name": # uncleaned project name, might contain space or dash
    "project_slug": # please skip, by default automatically replace space in 'project_name' by underscore
    "license": # license options that predefined under ~/dj-cookiecutter/{{cookiecutter.project_slug}}/LICENSE
}

If you want to know more details, read this page, it explains the basic logic about how cookiecutter works.

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License

© Datajoint, 2022. Licensed under an MIT license.