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During indexing, we now only need a single pass through the input files, instead of
two, this is in preparation for the S3 storage backend, where we don't have the luxury
of relying on a page cache to paper over our inefficencies.
Fixed
Fix bug that resulted in missed matches during highlighting (#442, thanks @schmika!)
Fix bug that resulted in incomplete reads from the input file under some circumstances (#441, thanks @schmika!)