Migration data export

This is a source repository for docker image to run all data export tasks of dictybase overhaul project.

Exporting data

Prerequisites

• Docker and docker-compose.
• A working connection to NU VPN.

Build the image

docker build --rm dictybase/migration-data-export .

For MacOSX with M1 chip system add the platform argument.

docker build --rm --platform linux/amd64 dictybase/migration-data-export .

Running the exports

• Connect to NU VPN.

Stockcenter

• Run compose

docker-compose -f dsc.yml up

It should take around few hours to complete. The script generally stay in the terminal even after it got finished. So, close it by pressing Ctrl+c.

• Run make task

make create-tarball

Will export data from containers to a folder named data in the current directory.

Command line (for understanding purpose only)

docker run --rm dictybase/migration-data-export -h

It will print out all the available scripts.