added CI stuff modeled after diffsims

.github/workflows/build.yml

@@ -0,0 +1,59 @@
+name: build
+
+on: 
+    push:
+        branches:
+            - master
+    pull_request:
+        branches:
+            - master
+
+jobs:
+  build-and-test:
+    name: ${{ matrix.os }}/py${{ matrix.python-version }}/pip
+    runs-on: ${{ matrix.os }}
+    timeout-minutes: 60
+    env:
+      MPLBACKEND: agg
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        python-version: [3.7, 3.8]
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Display versions of Python and Pip
+        run: python -V; pip -V
+      - name: Setup conda
+        uses: s-weigans/setup-conda@v1
+        with:
+            update-conda:true
+            conda-channels: conda-forge
+      - name: Check conda version
+        run: conda --version
+      - name: Install depedencies and package
+        shell: bash
+        run: pip install -U -e .; conda install match-series
+      - name: Run tests
+        run: pytest --cov=pymatchseries --pyargs pymatchseries
+      - name: Generate line coverage
+        if: ${{ matrix.os == 'ubuntu-latest' }}
+        run: coverage report --show-missing
+      - name: Upload coverage to Coveralls
+        if: ${{ matrix.os == 'ubuntu-latest' }}
+        uses: AndreMiras/coveralls-python-action@develop
+        with:
+          parallel: true
+
+  coveralls-finish:
+    needs: build-with-pip
+    runs-on: ubuntu-latest
+    steps:
+    - name: Coveralls finished
+      uses: AndreMiras/coveralls-python-action@develop
+      with:
+        parallel-finished: true

.github/workflows/python-publish.yml

@@ -0,0 +1,31 @@
+# This workflows will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install setuptools wheel twine
+    - name: Build and publish
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: |
+        python setup.py sdist bdist_wheel
+        twine upload dist/*

setup.py

@@ -1,11 +1,24 @@
 from setuptools import setup, find_packages
+from itertools import chain
 
 with open("README.md") as f:
     readme = f.read()
 
+
+# Projects with optional features for building the documentation and running
+# tests. From setuptools:
+# https://setuptools.readthedocs.io/en/latest/setuptools.html#declaring-extras-optional-features-with-their-own-dependencies
+extra_feature_requirements = {
+    "doc": ["sphinx >= 3.0.2", "sphinx-rtd-theme >= 0.4.3"],
+    "tests": ["pytest >= 5.4", "pytest-cov >= 2.8.1", "coverage >= 5.0"],
+}
+extra_feature_requirements["dev"] = ["black >= 19.3b0", "pre-commit >= 1.16"] + list(
+    chain(*list(extra_feature_requirements.values()))
+)
+
 setup(
     name="pyMatchSeries",
-    version="0.0.1",
+    version="0.1.0",
     description=("A python wrapper for the non-rigid-registration "
                  "code match-series"),
     url='https://github.com/din14970/pyMatchSeries',
@@ -20,11 +33,12 @@
                  'Programming Language :: Python :: 3.7',
                  'Programming Language :: Python :: 3.8'],
     keywords='TEM',
+    extras_require=extra_feature_requirements,
     packages=find_packages(exclude=["*tests*", "*examples*"]),
     package_data={'': ['pymatchseries/default_parameters.param']},
     include_package_data=True,
     install_requires=[
-        'hyperspy',
+        'hyperspy>=1.6.1',
         'Pillow',
         'tabulate',
     ],