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  1. vgteam/vg vgteam/vg Public

    tools for working with genome variation graphs

    C++ 1.1k 194

  2. waveygang/wfmash waveygang/wfmash Public

    base-accurate DNA sequence alignments using WFA and mashmap3

    C++ 177 19

  3. pangenome/pggb pangenome/pggb Public

    the pangenome graph builder

    Shell 395 44

  4. seqwish seqwish Public

    alignment to variation graph inducer

    C++ 143 18

  5. pangenome/smoothxg pangenome/smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 56 7

  6. freebayes/freebayes freebayes/freebayes Public

    Bayesian haplotype-based genetic polymorphism discovery and genotyping.

    C++ 789 264