To recreate the figures from the manuscript, run the models.py, pca.py and relevant_genes.py scripts. The raw data was too large to upload into this repository, so the ipython-notebook "data_preprocessing.ipynb" does not work, unless you have the raw data. Our preprocessed datasets can be found in the datasets directory. Our preprocessing pipeline is explained in detail in the manuscript.
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Project for completion of the module "Systems Biology: Computational Analysis and Interpretation of High-throughput Data"
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