Python: RandomForest conforms to sklearn Estimator interface #337
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| name: Python package | |
| on: | |
| workflow_dispatch: | |
| push: | |
| paths: | |
| - "Python/**" | |
| - "src/**" | |
| - ".github/workflows/python.yaml" | |
| branches: | |
| - master | |
| tags: | |
| - "[0-9]+.[0-9]+.[0-9]+" | |
| - "[0-9]+.[0-9]+.[0-9]+-rc[1-9]+" | |
| - "[0-9]+.[0-9]+.[0-9]+rc[1-9]+" | |
| - "[0-9]+.[0-9]+.[0-9]+-b[1-9]+" | |
| - "[0-9]+.[0-9]+.[0-9]+b[1-9]+" | |
| pull_request: | |
| paths: | |
| - "Python/**" | |
| - "src/**" | |
| - ".github/workflows/python.yaml" | |
| jobs: | |
| build_sdist: | |
| name: sdist build | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| cache: pip | |
| cache-dependency-path: Python/ci-requirements.txt | |
| - name: Install CI dependencies | |
| working-directory: Python/ | |
| run: pip install -r ci-requirements.txt | |
| - name: flake8 | |
| working-directory: Python/ | |
| run: | | |
| python3 -m flake8 | |
| - name: bandit | |
| working-directory: Python/ | |
| run: | | |
| python3 -m bandit -r . | |
| - name: isort | |
| working-directory: Python/ | |
| run: | | |
| python3 -m isort . --diff --check --color | |
| - name: black | |
| working-directory: Python/ | |
| run: | | |
| python3 -m black . --check --diff --exclude extension | |
| - name: Build | |
| working-directory: Python/ | |
| run: | | |
| python -m build --sdist | |
| # Ensure exactly one artifact was produced. | |
| [[ $(shopt -s nullglob; ls dist/*.tar.gz | wc -w) == 1 ]] || { | |
| echo "Unexpected content in dist dir: '$(ls dist/*.tar.gz)'." | |
| exit 1 | |
| } | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: sdist | |
| path: Python/dist/*.tar.gz | |
| build_linux_wheels: | |
| name: linux wheels build | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: read | |
| pull-requests: write | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Log in to the Container registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.11.2 | |
| env: | |
| CIBW_ARCHS: x86_64 | |
| CIBW_MANYLINUX_X86_64_IMAGE: ghcr.io/forestry-labs/rforestry/python_build_env:latest | |
| CIBW_BUILD: cp38-manylinux* cp39-manylinux* cp310-manylinux* cp311-manylinux* | |
| CIBW_TEST_EXTRAS: test | |
| CIBW_TEST_COMMAND: pytest /project/Python/tests --cov-report xml:/host/coverage.xml | |
| with: | |
| package-dir: Python/ | |
| output-dir: Python/dist | |
| # - name: Get Coverage | |
| # if: github.event_name == 'pull_request' | |
| # uses: petrovicboban/coverage@1.2 | |
| # with: | |
| # coverageFile: /coverage.xml | |
| # thresholdAll: 0.60 | |
| # thresholdModified: 0.60 | |
| # thresholdNew: 0.60 | |
| # token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: linux_wheels | |
| path: Python/dist/*.whl | |
| build_macos_wheels: | |
| name: macos wheels build for ${{ matrix.config.arch }} | |
| runs-on: macos-11 | |
| permissions: | |
| packages: read | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { arch: x86_64 } | |
| - { arch: arm64 } | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.11.2 | |
| env: | |
| CIBW_ARCHS: ${{ matrix.config.arch }} | |
| CIBW_BUILD: cp38-* cp39-* cp310-* cp311-* | |
| CIBW_TEST_EXTRAS: test | |
| CIBW_TEST_COMMAND: pytest work/Rforestry/Rforestry/Python/tests -v --color=yes | |
| with: | |
| package-dir: Python/ | |
| output-dir: Python/dist | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: macos_${{ matrix.config.arch }}_wheels | |
| path: Python/dist/*.whl | |
| release: | |
| needs: [build_sdist, build_linux_wheels, build_macos_wheels] | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| runs-on: ubuntu-22.04 | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: sdist | |
| path: packages | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: linux_wheels | |
| path: packages | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: macos_x86_64_wheels | |
| path: packages | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: macos_arm64_wheels | |
| path: packages | |
| - name: List | |
| run: | | |
| ls -alh packages | |
| - name: Extract Tag | |
| id: tag | |
| uses: aaronbarnaby/get-tag@v1.0.0 | |
| - name: Parse tag | |
| id: version | |
| uses: akshens/semver-tag@v4 | |
| with: | |
| version: ${{ steps.tag.outputs.tag }} | |
| - name: Publish prerelease packages to Test PyPI | |
| if: steps.version.outputs.is-prerelease == 'true' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| packages-dir: packages/ | |
| repository-url: https://test.pypi.org/legacy/ | |
| - name: Publish packages to PyPI | |
| if: steps.version.outputs.is-prerelease == 'false' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| packages-dir: packages/ | |
| - name: Create Release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| generate_release_notes: true | |
| files: | | |
| packages/* | |