version 0.7.2

• Dealing with the issue of some SVs not being detected properly when the reference genome contains lowercase letters

version 0.7.1

• Implement the support for duplex reads.
• Improved breakpoint detection by modifying a one-time Smith-Waterman algorithm.
• Tune-up parameters for each preset (--qv10, qv15, qv20, qv25) for breakpoint detection in one-time smith-waterman algorithm.
• Improved the logic for breakpoint detection for overlapped alignment.

version 0.7.0

• Improved the logic of the validation step in response to feedback from #35.
• Introduced CRAM format support, as per feedback received in #38.
• Added parameter preset options (--qv10, qv15, qv20, qv25) for PacBio HiFi and ONT Q20+ chemistry.
• Enhanced the robustness of the single breakend SV module procedures, addressing bug #39.

version 0.7.0b1

• Improved the logic of the validation step in response to feedback from #35.
• Introduced CRAM format support, as per feedback received in #38.
• Added parameter preset options (--qv10, qv15, qv20, qv25) for PacBio HiFi and ONT Q20+ chemistry.
• Enhanced the robustness of the single breakend SV module procedures, addressing bug #39.

version 0.6.0

• Significantly (2~3 times or more) reduced computational costs by improving the logic that pre-filters unlikely somatic SV candidates during the clustering step.
  

• Fixed error due to using numpy old type (thanks to MartinezRuiz-Carlos #37).

version 0.5.1

• Delete unnecessary intermediate files during multi-processing.
• Small bug fixes.

version 0.5.0

• Use of the control panel is supported.
• Multi-processing in the get command is supported.
• Several bug fixes.

version 0.4.0

• add post-filtering of the SV results.
• add the single-bnd option (still in alpha version experimental).
• generate VCF format file
• Optimizations for consensus generation and realignment validation steps.
• Modified bugs on breakpoint identifications.

version 0.4.0b2

• VCF format modifications.
• Bug fixes on VCF conversion errors.
• Optimizations for consensus generation and realignment validation steps.
• Modified bugs on breakpoint identifications.

version 0.4.0b1

• generate VCF format file
• add post-filtering of the SV results.
• add the single-bnd option (still in alpha version experimental).