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1. global_optimization global_optimization Public

   🦋 Zhang, et al, 2019. A global optimization algorithm for a sparse mixed-membership matrix factorization problem for molecular subtypes classification.

   Python 1

2. rvd2-variational rvd2-variational Public

   🐬 Fan Zhang, et al, 2017. BMC Bioinformatics. A variational Bayesian model to identify rare variants in heterogeneous NGS clinical samples.

   Python 1 1

3. immunogenomics/amp_phase1_ra immunogenomics/amp_phase1_ra Public

   🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

   Jupyter Notebook 21 13

4. immunogenomics/amp_phase1_ra_viewer immunogenomics/amp_phase1_ra_viewer Public

   🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

   R 3 2

5. immunogenomics/deeplearning_fan immunogenomics/deeplearning_fan Public

   🖥️ Implement deep learning methods in the single-cell world.

   HTML 4 1

6. immunogenomics/inflamedtissue_covid19_reference immunogenomics/inflamedtissue_covid19_reference Public

   🧬 Single-cell macrophage integration from inflammatory disease tissues and COVID-19

   Jupyter Notebook 5