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maximum biopy #61

Merged
merged 5 commits into from
Jan 31, 2024
Merged

maximum biopy #61

merged 5 commits into from
Jan 31, 2024

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hexylena
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anything beyond 1.81 doesn't support 'strand' so, pin;

@abretaud
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numpy wants a python >=3.9, maybe it's time to update our minimal version and the CI config?

@hexylena
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yeah agreed.

@hexylena
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this one PR encapsulates so much.. sadness over the churn of libraries lol.

  • newer biopython impacts bcbio_gff which isn't maintained so, can't update that
  • python3.11 isn't supported by nose, instead we'll have to switch test harnesses at some point
  • numpy wants 3.9 or higher

it's just so much churn for perfectly working software.

@hexylena hexylena merged commit 088ebfb into master Jan 31, 2024
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@hexylena hexylena deleted the llama-royal branch January 31, 2024 10:20
@abretaud
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thanks! actually there's a new bcbio-gff release I think (at least the recent PR was merged)

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2 participants