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v2022.1.0

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@gbouvignies gbouvignies released this 24 Oct 15:43
· 171 commits to main since this release

What's Changed

Refactor the code related to the kinetic models
A new plugin architecture has been implemented to facilitate the addition of new kinetic models. The code for calculating some of the
constrained rates and populations have been changed to use some optimization calculation instead of an analytical formula (when possible and when the analytical formula is more complicated to read).

'New' kinetic models have been added:

  • "3st_linear": A <-> B <-> C
  • "3st_fork": C <-> A <-> B
  • "3st_triangle": identical to "3st"
  • "2st_a_a2": 2*A <-> A2
  • "2st_a_a3": 3*A <-> A3
  • "2st_a_a4": 4*A <-> A4
  • "3st_a_a2_a3": 2*A <-> A2, A+A2 <-> A3
  • "3st_a_a2_a4": 2A <-> A2, 2A2 <-> A4

Full Changelog: v2022.0.1...v2022.1.0