failed to run `@example` block in src/examples/autodiff.md:33-39 ```@example autodiff struct DiffusionHMM{V1<:AbstractVector,M2<:AbstractMatrix,V3<:AbstractVector} <: AbstractHMM init::V1 trans::M2 means::V3 end ``` exception = invalid subtyping in definition of DiffusionHMM: can only subtype data types. Stacktrace: [1] top-level scope @ autodiff.md:34 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:44-55 ```@example autodiff HMMs.initialization(hmm::DiffusionHMM) = hmm.init function HMMs.transition_matrix(hmm::DiffusionHMM, λ::Number) N = length(hmm) return (1 - λ) * hmm.trans + λ * ones(N, N) / N end function HMMs.obs_distributions(hmm::DiffusionHMM, λ::Number) return [Normal((1 - λ) * hmm.means[i] + λ * 0) for i in 1:length(hmm)] end ``` exception = UndefVarError: `DiffusionHMM` not defined in `Main.__atexample__named__autodiff` Suggestion: add an appropriate import or assignment. This global was declared but not assigned. Stacktrace: [1] top-level scope @ autodiff.md:45 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:59-65 ```@example autodiff init = [0.6, 0.4] trans = [0.7 0.3; 0.3 0.7] means = [-1.0, 1.0] hmm = DiffusionHMM(init, trans, means); nothing #hide ``` exception = UndefVarError: `DiffusionHMM` not defined in `Main.__atexample__named__autodiff` Suggestion: add an appropriate import or assignment. This global was declared but not assigned. Stacktrace: [1] top-level scope @ autodiff.md:62 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:69-77 ```@example autodiff control_seqs = [rand(rng, 3), rand(rng, 5)]; obs_seqs = [rand(rng, hmm, control_seqs[k]).obs_seq for k in 1:2]; control_seq = reduce(vcat, control_seqs) obs_seq = reduce(vcat, obs_seqs) seq_ends = cumsum(length.(obs_seqs)); nothing #hide ``` exception = UndefVarError: `hmm` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] (::Main.__atexample__named__autodiff.var"#1#2")(k::Int64) @ Main.__atexample__named__autodiff ./none:0 [2] iterate @ ./generator.jl:48 [inlined] [3] collect(itr::Base.Generator{UnitRange{Int64}, Main.__atexample__named__autodiff.var"#1#2"}) @ Base ./array.jl:780 [4] top-level scope @ autodiff.md:70 [5] eval @ ./boot.jl:430 [inlined] [6] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [11] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:88-90 ```@example autodiff logdensityof(hmm, obs_seq, control_seq; seq_ends) ``` exception = UndefVarError: `seq_ends` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ autodiff.md:89 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:94-103 ```@example autodiff parameters = ComponentVector(; init, trans, means) function f(parameters::ComponentVector, obs_seq, control_seq; seq_ends) new_hmm = DiffusionHMM(parameters.init, parameters.trans, parameters.means) return logdensityof(new_hmm, obs_seq, control_seq; seq_ends) end; f(parameters, obs_seq, control_seq; seq_ends) ``` exception = UndefVarError: `seq_ends` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ autodiff.md:102 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:111-115 ```@example autodiff ∇parameters_forwarddiff = ForwardDiff.gradient( _parameters -> f(_parameters, obs_seq, control_seq; seq_ends), parameters ) ``` exception = UndefVarError: `seq_ends` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] (::Main.__atexample__named__autodiff.var"#4#5")(_parameters::ComponentArrays.ComponentVector{ForwardDiff.Dual{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8}}, Tuple{ComponentArrays.Axis{(init = 1:2, trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = 7:8)}}}) @ Main.__atexample__named__autodiff ./autodiff.md:113 [2] vector_mode_dual_eval! @ ~/.julia/packages/ForwardDiff/UBbGT/src/apiutils.jl:24 [inlined] [3] vector_mode_gradient(f::Main.__atexample__named__autodiff.var"#4#5", x::ComponentArrays.ComponentVector{Float64, Vector{Float64}, Tuple{ComponentArrays.Axis{(init = 1:2, trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = 7:8)}}}, cfg::ForwardDiff.GradientConfig{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8, ComponentArrays.ComponentVector{ForwardDiff.Dual{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8}}, Tuple{ComponentArrays.Axis{(init = 1:2, trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = 7:8)}}}}) @ ForwardDiff ~/.julia/packages/ForwardDiff/UBbGT/src/gradient.jl:91 [4] gradient @ ~/.julia/packages/ForwardDiff/UBbGT/src/gradient.jl:20 [inlined] [5] gradient(f::Main.__atexample__named__autodiff.var"#4#5", x::ComponentArrays.ComponentVector{Float64, Vector{Float64}, Tuple{ComponentArrays.Axis{(init = 1:2, trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = 7:8)}}}, cfg::ForwardDiff.GradientConfig{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8, ComponentArrays.ComponentVector{ForwardDiff.Dual{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{Main.__atexample__named__autodiff.var"#4#5", Float64}, Float64, 8}}, Tuple{ComponentArrays.Axis{(init = 1:2, trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = 7:8)}}}}) @ ForwardDiff ~/.julia/packages/ForwardDiff/UBbGT/src/gradient.jl:17 [6] gradient(f::Main.__atexample__named__autodiff.var"#4#5", x::ComponentArrays.ComponentVector{Float64, Vector{Float64}, Tuple{ComponentArrays.Axis{(init = 1:2, trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = 7:8)}}}) @ ForwardDiff ~/.julia/packages/ForwardDiff/UBbGT/src/gradient.jl:17 [7] top-level scope @ autodiff.md:112 [8] eval @ ./boot.jl:430 [inlined] [9] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [10] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [11] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [12] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [13] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [14] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging

failed to run `@example` block in src/examples/autodiff.md:117-121 ```@example autodiff ∇obs_forwarddiff = ForwardDiff.gradient( _obs_seq -> f(parameters, _obs_seq, control_seq; seq_ends), obs_seq ) ``` exception = UndefVarError: `obs_seq` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ autodiff.md:118 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:123-127 ```@example autodiff ∇control_forwarddiff = ForwardDiff.gradient( _control_seq -> f(parameters, obs_seq, _control_seq; seq_ends), control_seq ) ``` exception = UndefVarError: `control_seq` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ autodiff.md:124 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

failed to run `@example` block in src/examples/autodiff.md:137-144 ```@example autodiff ∇all_zygote = Zygote.gradient( (_a, _b, _c) -> f(_a, _b, _c; seq_ends), parameters, obs_seq, control_seq ); ∇parameters_zygote, ∇obs_zygote, ∇control_zygote = ∇all_zygote; nothing #hide ``` exception = UndefVarError: `obs_seq` not defined in `Main.__atexample__named__autodiff` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ autodiff.md:138 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, julia-actions/setup-julia@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/