Merge pull request #188 from genomic-medicine-sweden/cgl-pipeline-dev

Change prp interpretation for mlst allele calls
genomic-medicine-sweden · Oct 13, 2023 · 20b3c48 · 20b3c48
2 parents 12e2fa0 + bd669fe
commit 20b3c48
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/pipeline_result_processor/prp/parse/typing.py b/bin/pipeline_result_processor/prp/parse/typing.py
@@ -17,7 +17,7 @@ def _process_allele_call(allele):
     elif ',' in allele:
         return allele.split(',')
     elif '?' in allele:
-        return "novel"
+        return "partial"
     elif '~' in allele:
         return "novel"
     elif allele == '-':