ci: update pipeline (#4)

.github/workflows/ci.yaml

@@ -31,18 +31,25 @@ jobs:
 
       - name: Install requirements
         run: |
-          python -m pip install --upgrade pip
+          python -m pip install --upgrade pip setuptools
           pip install -r dev/requirements.txt
 
       - name: Test with pytest
         run: |
           pytest --cov=./ --cov-report=xml
 
       - name: Upload coverage report to codecov
+        if: matrix.os == 'ubuntu-latest'
         uses: codecov/codecov-action@v4
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
       - name: Lint with ruff
+        if: matrix.os == 'ubuntu-latest'
         run: |
-          ruff check src
+          ruff check src
+
+      - name: Check dependencies with pip-audit
+        if: matrix.os == 'ubuntu-latest'
+        run: |
+          pip-audit

README.md

@@ -3,4 +3,4 @@
 [![CI](https://img.shields.io/github/actions/workflow/status/mrsmrynk/aviary/ci.yaml?branch=main&color=black&label=CI&logo=GitHub)](https://github.com/mrsmrynk/aviary/actions/workflows/ci.yaml)
 [![Coverage](https://img.shields.io/codecov/c/github/mrsmrynk/aviary/main?color=black&label=Coverage&logo=codecov&logoColor=white)](https://app.codecov.io/gh/mrsmrynk/aviary)
 
-</div>
+</div>

dev/pre_commit_config.yaml

@@ -0,0 +1,15 @@
+repos:
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.6.0
+  hooks:
+    - id: check-added-large-files
+    - id: check-case-conflict
+    - id: check-toml
+    - id: check-yaml
+    - id: debug-statements
+    - id: end-of-file-fixer
+    - id: trailing-whitespace
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  rev: v0.3.7
+  hooks:
+    - id: ruff

dev/requirements.txt

@@ -1,7 +1,9 @@
 geopandas==0.14.3
 numpy==1.26.4
+pip-audit==2.7.2
+pre-commit==3.7.0
 pyproj==3.6.1
 pytest==8.1.1
 pytest-cov==5.0.0
 ruff==0.3.7
-shapely==2.0.3
+shapely==2.0.3

pyproject.toml

@@ -7,4 +7,4 @@ extend-select = [
     "C901",
     "E",
     "W",
-]
+]

requirements.txt

@@ -1,4 +1,4 @@
 geopandas==0.14.3
 numpy==1.26.4
 pyproj==3.6.1
-shapely==2.0.3
+shapely==2.0.3