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@giffordlabcvr

Rob J. Gifford Lab

Comparative Virus Research | Collaborative Virus Research

Overview

The Gifford Lab conducts scientific investigations into the evolution of viruses and their impact on host species.

Research themes include:

  • Long-term evolution of viruses: Exploring how viruses evolve over extended timescales.
  • Origins and emergence of viral pathogens: Investigating the evolutionary history and cross-species transmission events that give rise to new viral pathogens.
  • Impact of viruses on host species evolution: Examining how interactions with viruses shapes the evolution of host species.
  • Paleovirology: Uncovering the ancient interactions between viruses and hosts through the study of endogenous viral elements (EVEs).

Software & Resources

We are dedicated to advancing comparative genomics by creating open resources that promote collaborative research.

Our main focus is the GLUE software framework and various genomics resources developed using this framework.

We have also developed the DIGS tool - a framework for performing systematic in silico genome screening.

Pinned Loading

  1. gluetools gluetools Public

    An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

    Java 12 2

  2. RABV-GLUE RABV-GLUE Public

    A GLUE project for Rabies Virus (RABV).

    JavaScript 1

  3. Dengue-GLUE Dengue-GLUE Public

    A GLUE project for dengue virus (DENV)

    JavaScript

  4. HCV-GLUE HCV-GLUE Public

    A GLUE project for Hepatitis C virus (HCV)

    F* 1

  5. DIGS-tool DIGS-tool Public

    Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

    Perl 11 6

  6. WNV-GLUE WNV-GLUE Public

    A GLUE project for West Nile virus (WNV)

    JavaScript

Repositories

Showing 10 of 49 repositories
  • NCBI-HCV-GLUE Public

    Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.

    giffordlabcvr/NCBI-HCV-GLUE’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 24, 2024
  • AAV-Atlas Public

    An atlas of AAV genetic variants

    giffordlabcvr/AAV-Atlas’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 23, 2024
  • WNV-GLUE Public

    A GLUE project for West Nile virus (WNV)

    giffordlabcvr/WNV-GLUE’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 21, 2024
  • gluetools Public

    An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

    giffordlabcvr/gluetools’s past year of commit activity
    Java 12 2 1 0 Updated Dec 20, 2024
  • Lentivirus-GLUE-FIV Public

    Extension to Lentivirus-GLUE - contains all published feline lentivirus data from NCBI

    giffordlabcvr/Lentivirus-GLUE-FIV’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Dec 17, 2024
  • Lentivirus-GLUE Public

    A GLUE project for Lentiviruses (genus Lentivirus)

    giffordlabcvr/Lentivirus-GLUE’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 17, 2024
  • Lentivirus-GLUE-EIAV Public

    Extension to Lentivirus-GLUE - contains all published EIAV data from NCBI

    giffordlabcvr/Lentivirus-GLUE-EIAV’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 16, 2024
  • .github Public

    Organisation overview

    giffordlabcvr/.github’s past year of commit activity
    0 0 0 0 Updated Dec 16, 2024
  • Parvovirus-GLUE-EVE Public

    Extension to Parvovirus-GLUE - incorporates endogenous parvoviral elements (EPVs)

    giffordlabcvr/Parvovirus-GLUE-EVE’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 16, 2024
  • DIGS-for-EVEs Public

    An organised catalog of endogenous viral element (EVE) sequences identified via database-integrated genome screening (DIGS).

    giffordlabcvr/DIGS-for-EVEs’s past year of commit activity
    Perl 0 0 0 0 Updated Dec 12, 2024

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