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Add export option for single-scale OME-Zarr #189

Add export option for single-scale OME-Zarr

Add export option for single-scale OME-Zarr #189

Workflow file for this run

name: test
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
test-w-ilastik-env:
strategy:
matrix:
os: [windows-latest, ubuntu-latest]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
with:
# for codecov
fetch-depth: 5
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: ilastik-env
auto-update-conda: true
environment-file: .github/workflows/etc/ilastik-env.yaml
miniforge-version: latest
use-mamba: true
- name: linux test
if: matrix.os == 'ubuntu-latest'
shell: bash -l {0}
run: |
pip install -e .
xvfb-run --server-args="-screen 0 1024x768x24" pytest --cov-report=xml --cov=volumina
- name: osx test
if: matrix.os == 'macos-10.15'
shell: bash -l {0}
run: |
pip install -e .
pytest
- name: windows test
if: matrix.os == 'windows-latest'
shell: cmd /C CALL {0}
# auto activation of env does not seem to work on win
run: >-
pip install -e . && pytest
- uses: codecov/codecov-action@v4
if: matrix.os == 'ubuntu-latest'
with:
files: ./coverage.xml
fail_ci_if_error: true # optional (default = false)
verbose: true # optional (default = false)
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
test-w-conda-recipe:
strategy:
matrix:
os: [macos-latest, windows-latest, ubuntu-latest]
python_version: ["3.7", "3.8", "3.9"]
exclude:
- os: macos-latest
python_version: "3.7"
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: build-env
environment-file: .github/workflows/etc/build-env.yaml
auto-update-conda: true
miniforge-version: latest
use-mamba: true
- name: linux conda build test
if: matrix.os == 'ubuntu-latest'
shell: bash -l {0}
run: xvfb-run --server-args="-screen 0 1024x768x24" conda mambabuild --python=${{ matrix.python_version }} -c conda-forge conda-recipe
- name: osx test
if: startsWith(matrix.os, 'macos')
shell: bash -l {0}
run: conda mambabuild -c conda-forge --python=${{ matrix.python_version }} conda-recipe
- name: windows conda-build
if: matrix.os == 'windows-latest'
shell: cmd /C CALL {0}
run: conda mambabuild -c conda-forge --python=${{ matrix.python_version }} conda-recipe