Add export option for single-scale OME-Zarr #191
Workflow file for this run
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| name: test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test-w-ilastik-env: | |
| strategy: | |
| matrix: | |
| os: [windows-latest, ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # for codecov | |
| fetch-depth: 5 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ilastik-env | |
| auto-update-conda: true | |
| environment-file: .github/workflows/etc/ilastik-env.yaml | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: linux test | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| xvfb-run --server-args="-screen 0 1024x768x24" pytest --cov-report=xml --cov=volumina | |
| - name: osx test | |
| if: matrix.os == 'macos-10.15' | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| pytest | |
| - name: windows test | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd /C CALL {0} | |
| # auto activation of env does not seem to work on win | |
| run: >- | |
| pip install -e . && pytest | |
| - uses: codecov/codecov-action@v4 | |
| if: matrix.os == 'ubuntu-latest' | |
| with: | |
| files: ./coverage.xml | |
| fail_ci_if_error: true # optional (default = false) | |
| verbose: true # optional (default = false) | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| test-w-conda-recipe: | |
| strategy: | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| python_version: ["3.7", "3.8", "3.9"] | |
| exclude: | |
| - os: macos-latest | |
| python_version: "3.7" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: build-env | |
| environment-file: .github/workflows/etc/build-env.yaml | |
| auto-update-conda: true | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: linux conda build test | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: xvfb-run --server-args="-screen 0 1024x768x24" conda mambabuild --python=${{ matrix.python_version }} -c conda-forge conda-recipe | |
| - name: osx test | |
| if: startsWith(matrix.os, 'macos') | |
| shell: bash -l {0} | |
| run: conda mambabuild -c conda-forge --python=${{ matrix.python_version }} conda-recipe | |
| - name: windows conda-build | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd /C CALL {0} | |
| run: conda mambabuild -c conda-forge --python=${{ matrix.python_version }} conda-recipe |