iblatlas

Tools to manipulate hierarchical 3D representations of the mouse brain anatomy for electrophysiolgy experiments. The tools are mainly using the the Allen CCF although some other atlases can be used.

This repository uses minimal requirements, based of standard matplotlib, numpy and scipy libraries, to the exclusion of more complex visualization tools such as pyqt.

Documentation

Full package documentation

Notebooks and examples

Installation

pip install iblatlas

Contributing

Changes are merged by pull requests. Release checklist:

• Update version in iblatlas/__init__.py
• Update CHANGELOG.md
• Create a pull request to the main branch on GitHub
• Once the PR is merged, create a new tag and push the tag

Once a tag is pushed on main the package is uploaded to PyPI using GitHub Actions.