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This workshop aims to provide MBON teams with practical tools and expert guidance for mobilizing their biological data into OBIS.

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Marine Biological Data Mobilization Workshop 2023

Workshop Digital Object Identifiers (DOI):

DOI Year
DOI ALL
DOI 2024
DOI 2023
DOI 2022

This repository is for participants to get general information and ask questions related to the Biological Data Mobilization Workshop (via the issues section).

Marine Data Mobilization Workshop for Biology and Ecosystem Essential Ocean Variables (Bio-Eco EOV) is a Contribution to the UN Decade on Ocean Science for Sustainable Development and the Marine Life 2030 Decade Action. The workshop is jointly hosted by CIOOS, IOOS, Hakai, MBON, OBIS-USA, and OTN.

This workshop is a small hands-on, interactive virtual workshop focused on mobilizing marine biological observation datasets to the Ocean Biodiversity Information System (OBIS) by helping data providers standardize their data using Darwin Core. This includes species observations from any type of sampling methodologies (e.g. visual surveys, net tows, microscopy, fish trawls, imaging, 'omics, acoustics, telemetry).

Workshop website: https://ioos.github.io/bio_mobilization_workshop/

Contributing

We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the [more detailed guidelines][lesson-example] on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of [issues][FIXME] for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon. Look for the tag good_first_issue. This indicates that the maintainers will welcome a pull request fixing this issue.

Maintainer(s)

Current maintainers of this lesson are

  • @MathewBiddle
  • @7yl4r
  • @albenson-usgs

Authors

A list of contributors to the lesson can be found in AUTHORS

Citation

To cite this lesson, please consult with CITATION

Deploying site locally

See this documentation.

Navigate to the folder that contains the lesson, and use bundle exec jekyll serve to preview the lessons.

If changing headers and menus bundle exec jekyll clean before serving.

How this repo is organized

At the completion of each event, this repository will be tagged and a release will be created with the year of the event (following Calendar Versioning scheme YYYY]). A DOI will be minted through Zenodo (see DOI table above). Since the workshop is intended to provide the most up to date information on aligning data to Darwin Core, the maintainers decided that we will continually build and update these materials instead of providing access to the previous years materials in subsequent yearly websites. If you would like to rebuild a specific year's website, checkout a specific release (eg. $ git checkout 2023) and build the website from that content.

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This workshop aims to provide MBON teams with practical tools and expert guidance for mobilizing their biological data into OBIS.

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