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Fix on using new basic ID mapping
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UPIMAPI was following through, but must end right after the basic mapping
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iquasere committed Jul 7, 2023
1 parent aeef260 commit 81f4aca
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Showing 2 changed files with 2 additions and 1 deletion.
2 changes: 1 addition & 1 deletion meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ requirements:
- tqdm
- requests
- biopython
- yaml
- pyyaml

test:
commands:
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1 change: 1 addition & 0 deletions upimapi.py
Original file line number Diff line number Diff line change
Expand Up @@ -1354,6 +1354,7 @@ def upimapi():

if args.from_db != 'UniProtKB AC/ID' or args.to_db != 'UniProtKB':
basic_idmapping_multiprocess(ids, table_output, args.from_db, args.to_db, threads=args.threads)
return

if not args.skip_id_checking:
ids, not_valid = get_valid_entries_multiprocess(ids, threads=args.threads)
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