AlignQC 2.0.4

An across the board improvement on stability. Better cross-platform compatibility. Docker added. Now -t or --no_transcriptome has replace -a, and -g or --genome has replaced -r to reduce the ambiguity. Now by default -t takes a GTF format file. with optional --gpd flag to indicate GPD format.

Current version code accompanying publication.

There are no changes from version 1.2. This release will enable Zenodo to assign a DOI for citing in the publication.

AlignQC-1.2

Patch notes:

1. Now first non-whitespace characters in the header is the only part of the Fasta header used as a reference sequence name. The goal is to improve compatibility with typical aligner behaviour.
2. Fixed numerous performance issues.
3. Fixed graphical bug in transcript table.
4. Distribution of distances of observed junction boundaries from near-by reference boundaries is shown in "error" analysis.

AlignQC-1.1

Patch notes:

1. Improved figure graphics.
2. Performance improvements
3. 'dump' command for accessing data URIs embedded in xhtml files in
   the command line
4. 'compare' command for generating comparisons between xhtml outputs.
5. The coverage distribution plot is now color coded by the N highest
   expressed bases in descending order. i.e., bright red means the most
   expressed 50k bases.

AlignQC 1.0

This is version 1.0 our first release of AlignQC.