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148 followers · 31 following

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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Organizations

@nf-core @SPAAM-community @sidora-tools @poseidon-framework

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jfy133/README.md

Hi there 👋, my name is James

I am a bioinformatician / biomolecular archaeologist, specialising in ancient metagenomics

My GitHub Stats

🤖 I like automation, metadata, documentation and community projects!

🧬 My current research focus is currently on improving throughput of NGS sequencing data processing, and authentication of very old metagenomic ancient DNA samples.

👪 I'm currently a core-team member of the nf-core initative of standardised Nextflow pipelines and I established the SPAAM-community of ancient metagenomics researchers.


Skills

nextflowNEXTFLOW

r

bioconda

bash

git

linux


Research

orcid google-scholar


Contact

linked-in twitter


Current projects

Nextflow Pipelines

Others


Mastodon

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  1. MEx-IPA MEx-IPA Public

    Interactive results viewer for maltExtract

    R 3

  2. nf-core/eager nf-core/eager Public

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

    Nextflow 147 82

  3. cuperdec cuperdec Public

    R library to generate 'Cumulative Percent Decay' curves for microbial taxonomic profiles

    R 3

  4. SPAAM-community/AncientMetagenomeDir SPAAM-community/AncientMetagenomeDir Public

    Repository containing lists of all published ancient metagenomic (and related) samples and libraries

    HTML 66 31