Linux/Mac build #1157
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Linux/Mac build | |
| on: | |
| push: | |
| paths: | |
| - '**' | |
| - '!*' | |
| - '*.py' | |
| - '!doc/**' | |
| - '!.github/**' | |
| - '.github/workflows/build.yml' | |
| pull_request: | |
| paths-ignore: | |
| - 'doc/**' | |
| schedule: | |
| - cron: '0 20 * * 2' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| if: "!contains(github.event.head_commit.message, 'ci skip')" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_actionAngle.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_sphericaldf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: true | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_actionAngleTorus.py tests/test_conversion.py tests/test_galpypaper.py tests/test_import.py tests/test_interp_potential.py tests/test_kuzminkutuzov.py tests/test_util.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_SpiralArmsPotential.py tests/test_potential.py tests/test_scf.py tests/test_snapshotpotential.py | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_quantity.py tests/test_coords.py | |
| REQUIRES_PYNBODY: false | |
| # needs to be separate for different config | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_evolveddiskdf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_jeans.py tests/test_dynamfric.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_qdf.py tests/test_pv2qdf.py tests/test_streamgapdf_impulse.py tests/test_noninertial.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: true | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_streamgapdf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_diskdf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_streamdf.py tests/test_streamspraydf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: 3.9 | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: 3.9 | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: 3.8 | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: ubuntu-latest | |
| python-version: 3.8 | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: macos-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: macos-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: true | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| env: | |
| PYTHON_COVREPORTS_VERSION: "3.11" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install lcov | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| wget https://github.com/linux-test-project/lcov/releases/download/v1.15/lcov-1.15.tar.gz | |
| tar xf lcov-1.15.tar.gz | |
| sudo make -C lcov-1.15/ install | |
| - name: Install the GSL | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get install libgsl-dev | |
| - name: Install the GSL | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| brew install gsl | |
| echo "CFLAGS=-I$(brew --prefix)/include" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L$(brew --prefix)/lib" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$(brew --prefix)/lib" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('.github/workflows/build.yml') }}-${{ matrix.REQUIRES_PYNBODY }}-${{ matrix.REQUIRES_ASTROPY }}-${{ matrix.REQUIRES_ASTROQUERY }}-${{ matrix.REQUIRES_NUMBA }}-${{ matrix.REQUIRES_JAX }} | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade --upgrade-strategy eager numpy scipy matplotlib numexpr setuptools cython pytest tqdm | |
| - name: Install pynbody | |
| if: ${{ matrix.REQUIRES_PYNBODY }} | |
| run: | | |
| pip install --upgrade --upgrade-strategy eager h5py pandas pytz | |
| pip install --upgrade --upgrade-strategy eager wheel | |
| pip install --upgrade --upgrade-strategy eager pynbody | |
| - name: Install astropy | |
| if: ${{ matrix.REQUIRES_ASTROPY }} | |
| run: pip install astropy pyerfa | |
| - name: Install astroquery | |
| if: ${{ matrix.REQUIRES_ASTROQUERY }} | |
| run: pip install astroquery | |
| - name: Install numba | |
| if: ${{ matrix.REQUIRES_NUMBA }} | |
| run: | | |
| pip install numba | |
| # numba may force install an older version of setuptools, | |
| # but it isn't actually a *runtime* requirement numba/numba#8366 | |
| pip install --upgrade --force-reinstall setuptools | |
| - name: Install JAX | |
| if: ${{ matrix.REQUIRES_JAX }} | |
| run: pip install jax jaxlib | |
| - name: Install torus code | |
| env: | |
| TEST_FILES: ${{ matrix.TEST_FILES }} | |
| run: | | |
| if [[ $TEST_FILES != 'tests/test_evolveddiskdf.py' ]]; then | |
| git clone https://github.com/jobovy/Torus.git galpy/actionAngle/actionAngleTorus_c_ext/torus | |
| cd galpy/actionAngle/actionAngleTorus_c_ext/torus | |
| git checkout galpy | |
| cd - | |
| fi | |
| - name: Install package | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| python setup.py build_ext --no-openmp --coverage --single_ext --inplace | |
| python setup.py develop --single_ext | |
| - name: Install package | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| python -m pip install -v . | |
| - name: Special config | |
| env: | |
| TEST_FILES: ${{ matrix.TEST_FILES }} | |
| run: | | |
| if [[ $TEST_FILES == 'tests/test_evolveddiskdf.py' ]]; then echo -e '[normalization]' > $HOME/.galpyrc && echo -e 'ro = 8.' >> $HOME/.galpyrc && echo -e 'vo = 220.' >> $HOME/.galpyrc; fi | |
| if [[ $TEST_FILES == 'tests/test_diskdf.py' ]]; then echo -e '[normalization]' > $HOME/.galpyrc && echo -e 'ro = 8.' >> $HOME/.galpyrc && echo -e '[astropy]' >> $HOME/.galpyrc && echo -e 'astropy-units = False' >> $HOME/.galpyrc && echo -e '[plot]' >> $HOME/.galpyrc && echo -e 'seaborn-bovy-defaults = True' >> $HOME/.galpyrc && echo -e '[warnings]' >> $HOME/.galpyrc && echo -e 'verbose = True' >> $HOME/.galpyrc; fi | |
| - name: Print debug info | |
| env: | |
| REQUIRES_ASTROPY : ${{ matrix.REQUIRES_ASTROPY }} | |
| REQUIRES_ASTROQUERY : ${{ matrix.REQUIRES_ASTROQUERY }} | |
| REQUIRES_PYNBODY : ${{ matrix.REQUIRES_PYNBODY }} | |
| run: | | |
| python -c "import numpy; print('numpy: {}'.format(numpy.__version__))" | |
| python -c "import scipy; print('scipy: {}'.format(scipy.__version__))" | |
| python -c "import matplotlib; print('matplotlib: {}'.format(matplotlib.__version__))" | |
| if $REQUIRES_ASTROPY; then python -c "import astropy; print('astropy: {}'.format(astropy.__version__))"; fi | |
| if $REQUIRES_ASTROQUERY; then python -c "import astroquery; print('astroquery: {}'.format(astroquery.__version__))"; fi | |
| if $REQUIRES_PYNBODY; then python -c "import pynbody; print('pynbody: {}'.format(pynbody.__version__))"; fi | |
| - name: Test with pytest | |
| env: | |
| TEST_FILES: ${{ matrix.TEST_FILES }} | |
| REQUIRES_ASTROPY : ${{ matrix.REQUIRES_ASTROPY }} | |
| run: | | |
| pip install coverage | |
| pip install pytest-cov | |
| # Turn astropy deprecation warnings into errors as well if astropy | |
| if $REQUIRES_ASTROPY; then export PYTEST_ADDOPTS="-W error::astropy.utils.exceptions.AstropyDeprecationWarning"; else export PYTEST_ADDOPTS=""; fi | |
| export XDRLIB_DEPRECATION="-W ignore:\"'xdrlib' is deprecated and slated for removal in Python 3.13\":DeprecationWarning" | |
| # eval necessary for -k 'not ...' in TEST_FILES | |
| eval "pytest -W error::DeprecationWarning -W error::FutureWarning $PYTEST_ADDOPTS $XDRLIB_DEPRECATION -v $TEST_FILES --cov galpy --cov-config .coveragerc --disable-pytest-warnings --durations=0 --cov-report=term --cov-report=xml" | |
| - name: Generate code coverage | |
| if: ${{ matrix.python-version == env.PYTHON_COVREPORTS_VERSION && matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| lcov --capture --base-directory . --directory build/temp.linux-x86_64-`python -c "import sys; print(sys.implementation.cache_tag)"`/galpy/ --no-external --output-file coverage_full.info | |
| lcov --remove coverage_full.info 'galpy/actionAngle/actionAngleTorus_c_ext/torus/*' -o coverage.info | |
| - name: Upload coverage reports to codecov | |
| if: ${{ matrix.python-version == env.PYTHON_COVREPORTS_VERSION && matrix.os == 'ubuntu-latest' }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |