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  1. PIVOT PIVOT Public

    Platform for Interactive analysis and Visualization Of Transcriptomics data

    HTML 27 16

  2. VisCello VisCello Public

    Viscello for Visualization of Single Cell Data

    R 23 9

  3. VERSE VERSE Public

    A versatile and efficient RNA-Seq read counting tool

    C 16 3

  4. kidneycellexplorer kidneycellexplorer Public

    R 8 5

  5. nofold nofold Public

    Motif finder for RNA secondary structures

    Python 5 1

  6. Theia Theia Public

    R/shiny interface for Kim Lab RNA-seq Pipeline Quality Control

    R 2

Repositories

Showing 10 of 21 repositories
  • track-image-experiments Public

    Track metadata for imaging experiments

    kimpenn/track-image-experiments’s past year of commit activity
    JavaScript 0 GPL-2.0 0 0 0 Updated Dec 6, 2024
  • smito-analysis Public

    This repository contains code for SMITO data analysis

    kimpenn/smito-analysis’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Nov 27, 2024
  • smito-pipeline Public

    Single-MITOchondrion (SMITO) SNV Pipeline

    kimpenn/smito-pipeline’s past year of commit activity
    Shell 0 Artistic-2.0 0 0 0 Updated Nov 27, 2024
  • aegle_patch_viewer Public
    kimpenn/aegle_patch_viewer’s past year of commit activity
    Python 0 0 0 0 Updated Nov 6, 2024
  • VisCello.celegans Public
    kimpenn/VisCello.celegans’s past year of commit activity
    R 0 1 0 0 Updated Oct 28, 2024
  • VisCello Public

    Viscello for Visualization of Single Cell Data

    kimpenn/VisCello’s past year of commit activity
    R 23 9 2 0 Updated Oct 5, 2024
  • chex-analysis Public

    This repository contains code for CHEX-seq data analysis.

    kimpenn/chex-analysis’s past year of commit activity
    R 0 MPL-2.0 0 0 0 Updated Jul 31, 2024
  • chex-seq Public

    This is the computational pipeline for CHEX-seq data

    kimpenn/chex-seq’s past year of commit activity
    Perl 0 MPL-2.0 0 0 0 Updated Jul 31, 2024
  • microscope-utility Public

    Automation workflow for Kim Lab Microscope.

    kimpenn/microscope-utility’s past year of commit activity
    Python 1 0 0 0 Updated Nov 30, 2023
  • PIC-snATAC Public

    A package for Paired Insertion Counting for snATAC-seq data.

    kimpenn/PIC-snATAC’s past year of commit activity
    R 0 0 0 0 Updated Nov 12, 2023
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