0.1.2-alpha

This is a bug-fix patch.

Bug fixes

• Fixes an issue where mixed case bases cause a very high number of candidate variants, causing massive slow-down in variant calling. Capitalisation is now applied to all reference and read bases by default, and must be explicitly disabled by the user.
• Corrects a typo in one of the search paths used in FindHTSlib.cmake.

New features

• Command line options --disable-reference-base-capitalisation and --disable-read-base-capitalisation to disable reference and read base capitalisation respectively.