Update remaining python dependencies for various tools (#26081) #491

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Run time

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Job	Run time
make_check_llvm_none	8m 34s
make_check	9m 44s
check_annotations_rt_calls	1m 52s
check_compiler_dyno_tests	13m 0s
make_doc	5m 28s
make_mason	9m 50s
	48m 28s