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@kyleam kyleam released this 19 Aug 20:59
· 724 commits to main since this release
1.4.0
f785567

Release Notes

New features and changes

  • The new .include argument of config_log(), run_log(), and summary_log() limits the result to the specified run names or tags. (#484, #526)

  • Models can now be starred. See add_star() and remove_star(). (#487)

  • New convenience functions get_omega(), get_sigma(), and get_theta() return labeled values, with the OMEGA and SIGMA values expanded to a full matrix. (#515)

  • param_estimates gained an .alpha argument that's useful for identifying the ETAs flagged by the eta_pval_significant heuristic. (#497)

  • nm_join() now aborts if the join column has duplicate values, suggesting to the caller that the table format probably needs to be widened to prevent NONMEM from truncating the values. (#533)

  • If the caller specifies a threads value above one in .bbi_args but does not specify parallel, parallel = TRUE is added so that the threads value is in effect. (#514)

  • New functions check_nonmem_finished() and wait_for_nonmem() enable checking and waiting on models submitted to the grid. (#480)

  • Added test_threads() for benchmarking simulation run times with various threads values. (#473, #489, #519, #542)

  • Added check_run_times() for checking the estimation times of model runs. (#473, #489, #511)

  • Added delete_models() for removing all model files associated with specified model tags. (#473)

  • Updated parallel tips and tricks vignette to reference new test_threads() function and related helpers. (#503)

  • bbi encodes "unspecified" and NA values as -999999999. bbr now maps all occurrences of this value to NA when creating a model summary object. (#524)

  • When bbi v3.2.0 or later is available, model_summaries() now uses bbi's concurrency rather than calling model_summary() on each model, leading to a speed up when many models are passed. (#527)

  • model_diff() learned to print a message rather than call diffobj::diffFile() when there are no changes to avoid confusingly displaying the entire file. (#522)

  • use_bbi now creates leading directories if needed. (#499)

  • new_model now ignores the extension of the supplied path. (#510)

  • The output of print_bbi_args has been reworked to make it easier to digest. (#537)

Bug fixes

  • nm_join() did not reliably sort the resulting data frame when passed .superset = TRUE. (#508)

  • nm_file() and friends now detect duplicate column names and make them unique. (#530, #539)

  • Unlike submit_model(), submit_models() didn't abort when bbi.yaml was missing. (#496)

  • In combination with a change in bbi v3.2.0, model_summary() can now handle .lst files that have NaN objective function values. (#506)

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