fix contig_id variable append to array

microbiomedata · Jul 24, 2024 · 5ba7e41 · 5ba7e41
1 parent 4a9cda7
commit 5ba7e41
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/mbin_nmdc.wdl b/mbin_nmdc.wdl
@@ -331,8 +331,8 @@ task check_id_map{
     with open("~{contig_file}","r") as c_file:
         for line in c_file:
             if line.startswith(">"):
-                file_id = line[1:].rstrip().split()[0]
-                contigIDs.append("file_id")
+                file_id = line[1:].rstrip().split()[0] # nmdc:wfmgan-12-gbysvd76.1_0000001
+                contigIDs.append(file_id)
     with open("~{proteins_file}","r") as p_file:
         for line in p_file:
             if line.startswith(">"):