Merge branch 'master' into 39-add-wdl-linter-github-action

microbiomedata · Jul 23, 2024 · 63d5aa9 · 63d5aa9
2 parents e97f512 + 125c1e3
commit 63d5aa9
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diff --git a/mbin_nmdc.wdl b/mbin_nmdc.wdl
@@ -82,33 +82,31 @@ workflow nmdc_mags {
     }
 
     call finish_mags {
-        input:
-        container="microbiomedata/workflowmeta:1.1.1",
-        contigs=stage.contig,
-        anno_gff=stage.gff,
-        sorted_bam=stage.sam,
-        proj=proj,
-        start=stage.start,
-        checkm = mbin_nmdc.checkm,
-        bacsum= mbin_nmdc.bacsum,
-        arcsum = mbin_nmdc.arcsum,
-        short = mbin_nmdc.short,
-        low = mbin_nmdc.low,
-        unbinned = mbin_nmdc.unbinned,
-        checkm = mbin_nmdc.checkm,
-        mbin_sdb = mbin_nmdc.mbin_sdb,
-        mbin_version = mbin_nmdc.mbin_version,
-        stats_json = mbin_nmdc.stats_json,
-        stats_tsv = mbin_nmdc.stats_tsv,
-        hqmq_bin_fasta_files = mbin_nmdc.hqmq_bin_fasta_files,
-        bin_fasta_files = mbin_nmdc.lq_bin_fasta_files,
-        hqmq_bin_tarfiles = package.hqmq_bin_tarfiles,
-        lq_bin_tarfiles = package.lq_bin_tarfiles,
-        barplot = package.barplot,
-        heatmap = package.heatmap,
-        kronaplot = package.kronaplot,
-        eukcc_file=mbin_nmdc.eukcc_csv,
-        ko_matrix = package.ko_matrix
+        input:  container="microbiomedata/workflowmeta:1.1.1",
+        	contigs=stage.contig,
+        	anno_gff=stage.gff,
+        	sorted_bam=stage.sam,
+        	proj=proj,
+        	start=stage.start,
+        	bacsum= mbin_nmdc.bacsum,
+        	arcsum = mbin_nmdc.arcsum,
+        	short = mbin_nmdc.short,
+        	low = mbin_nmdc.low,
+        	unbinned = mbin_nmdc.unbinned,
+        	checkm = mbin_nmdc.checkm,
+        	mbin_sdb = mbin_nmdc.mbin_sdb,
+        	mbin_version = mbin_nmdc.mbin_version,
+        	stats_json = mbin_nmdc.stats_json,
+        	stats_tsv = mbin_nmdc.stats_tsv,
+        	hqmq_bin_fasta_files = mbin_nmdc.hqmq_bin_fasta_files,
+        	bin_fasta_files = mbin_nmdc.lq_bin_fasta_files,
+        	hqmq_bin_tarfiles = package.hqmq_bin_tarfiles,
+        	lq_bin_tarfiles = package.lq_bin_tarfiles,
+        	barplot = package.barplot,
+        	heatmap = package.heatmap,
+        	kronaplot = package.kronaplot,
+        	eukcc_file=mbin_nmdc.eukcc_csv,
+        	ko_matrix = package.ko_matrix
     }
 
     output {

diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-v1.3.3
+v1.3.4