v0.0.7: Merge pull request #38 from microbiomedata/nmdc-import

branch to check http import for nmdc

v0.0.6

New Independent Repos

• metaT_ReadsQC
• metaT_Assembly
• metaT_ReadCounts

WDLs update to v1.0 and changed to align with JGI transcriptomic workflows

v0.0.5

• replaced hisat2 with bbmap
• updated featurecount to latest version
• updated featurecount parameter to match JGI read count approach.

v0.0.4

• crt turned off (causing failure)
• default cpus for hmm is hard coded and not passed from the input
• updated annotation container version
• change database path
• removed redundant prefix var
• typo bug fixed in two crt_execute option
• added large test output and input

v0.0.3

• Combined metaT_part1.wdl with metaT_part2.wdl to metaT.wdl.
• Added annotation module. Now, the workflow will also perform annotation on assembled contigs.
• Added RQC to the the workflow. Now raw reads are first processed with RQC (including removal of rRNA reads).
• Workflow now copies relevant files to output folder from cromwell-execution folder.

v0.0.2

• Two part metaT workflow using wdl