Merge pull request #505 from microbiomedata/nmdc-schema-10.2.0

Upgrade to nmdc-schema 10.2.0
microbiomedata · Apr 18, 2024 · 2c11b6a · 2c11b6a
2 parents 24908dc + 17b0549
commit 2c11b6a
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Showing 2 changed files with 17 additions and 2 deletions.
diff --git a/requirements/main.in b/requirements/main.in
@@ -24,7 +24,7 @@ mkdocs-jupyter
 mkdocs-material
 mkdocs-mermaid2-plugin
 motor
-nmdc-schema==10.1.4
+nmdc-schema==10.2.0
 openpyxl
 pandas
 passlib[bcrypt]

diff --git a/requirements/main.txt b/requirements/main.txt
@@ -62,6 +62,8 @@ beautifulsoup4==4.12.3
     #   -r requirements/main.in
     #   mkdocs-mermaid2-plugin
     #   nbconvert
+bioregistry==0.10.158
+    # via nmdc-schema
 black==24.2.0
     # via shed
 bleach==6.1.0
@@ -95,14 +97,17 @@ click==8.1.7
     # via
     #   -r requirements/main.in
     #   beanie
+    #   bioregistry
     #   black
     #   dagster
     #   dagster-webserver
     #   json-flattener
     #   linkml
     #   linkml-runtime
     #   mkdocs
+    #   more-click
     #   prefixcommons
+    #   pystow
     #   terminusdb-client
     #   uvicorn
 colorama==0.4.6
@@ -121,6 +126,7 @@ cryptography==42.0.5
     # via python-jose
 curies==0.7.7
     # via
+    #   bioregistry
     #   linkml-runtime
     #   prefixmaps
 dagit==1.6.8
@@ -435,6 +441,8 @@ mkdocs-mermaid2-plugin==0.6.0
     #   nmdc-schema
 mkdocs-redirects==1.2.1
     # via nmdc-schema
+more-click==0.1.2
+    # via bioregistry
 motor==3.3.2
     # via
     #   -r requirements/main.in
@@ -460,7 +468,7 @@ nbformat==5.9.2
     #   nbconvert
 nest-asyncio==1.6.0
     # via ipykernel
-nmdc-schema==10.1.4
+nmdc-schema==10.2.0
     # via -r requirements/main.in
 notebook==7.1.1
     # via jupyter
@@ -566,6 +574,7 @@ pydantic==2.6.3
     # via
     #   -r requirements/main.in
     #   beanie
+    #   bioregistry
     #   curies
     #   dagster
     #   fastapi
@@ -608,6 +617,8 @@ pyshexc==0.9.1
     # via
     #   linkml
     #   pyshex
+pystow==0.5.4
+    # via bioregistry
 pytest==8.0.2
     # via pytest-logging
 pytest-logging==2015.11.4
@@ -700,6 +711,7 @@ regex==2023.12.25
 requests==2.31.0
     # via
     #   -r requirements/main.in
+    #   bioregistry
     #   curies
     #   dagster
     #   dagster-graphql
@@ -711,6 +723,7 @@ requests==2.31.0
     #   mkdocs-mermaid2-plugin
     #   prefixcommons
     #   pyshex
+    #   pystow
     #   requests-cache
     #   requests-toolbelt
     #   sphinx
@@ -857,7 +870,9 @@ tornado==6.4
 tqdm==4.66.2
     # via
     #   -r requirements/main.in
+    #   bioregistry
     #   dagster
+    #   pystow
     #   terminusdb-client
 traitlets==5.14.1
     # via