v11.0.1

What's Changed

• Add bulk chemistry back to AnalysisTypeEnum by @pkalita-lbl in #2197

Full Changelog: v11.0.0...v11.0.1

v11.0.0

What's Changed

• Merge Berkeley schema (berkeley-schema-fy24/main) into Legacy schema (nmdc-schema/main) by @turbomam in #2195

Thanks to all of our internal and external contributors! 🎉

Full Changelog: v10.9.1...v11.0.0

v10.9.1

Full Changelog: v10.8.0...v10.9.1

regenerated derivative schema files

v10.9.0

What's Changed

• 2158 eukaryotic binning results modeling by @aclum in #2159
• Add pfam clan prefix by @aclum in #2163

Full Changelog: v10.7.0...v10.9.0

v10.8.0

What's Changed

• 2158 eukaryotic binning results modeling by @aclum in #2159
• Add pfam clan prefix by @aclum in #2163

Full Changelog: v10.7.0...v10.8.0

v10.7.0

What's Changed

• 2142 fileenumtype for indexed bam file by @aclum in #2143
• Delete queries for orphan functional_annotation_agg records and id non-conformaing Data Objects by @mbthornton-lbl in #2013

Full Changelog: v10.6.0...v10.7.0

v10.6.0

What's Changed

• Format Python source code (PR target: napa_compliance branch) by @eecavanna in #1382
• Convert insert_many_pymongo.py into click CLI command by @eecavanna in #1730
• Update connect_napa_mongo.py to output tsv with deleted record identifiers by @mbthornton-lbl in #1902
• napa_compliance branch: Update script to generate request bodies for /queries:run endpoint by @eecavanna in #1941
• Allow nmdc_data.py consumer to specify which variant of schema they want to access by @eecavanna in #2091
• Add PR template specific to the schema soft freeze (nmdc-schema) by @mslarae13 in #2105
• Use newer version of urllib3 to avoid moderate security bug by @turbomam in #2097
• manual poetry update for certifi warning by @turbomam in #2112
• Limit regex-anchoring carets (^) to LinkML settings, not structured_patterns by @turbomam in #2098
• Remove nmdc_schema/nmdc_schema_accepting_legacy_ids.yaml and all references to it by @turbomam in #2094
• Remove nmdc_schema/nmdc_schema_merged.yaml along with all references to it by @turbomam in #2099
• Create DataObject_gen_by_omics.yaml by @aclum in #2118
• 1000 model rna library preparation by @aclum in #2113
• Modeling of workflow execution activities for metatranscriptomes by @aclum in #2117
• Napa compliance by @aclum in #1246
• Add tooltip annotation for gold_path_field by @aclum in #2120
• Adding metatranscriptome FileTypeEnum permissible values by @aclum in #2115
• Make it so PR template appears when people create PRs by @eecavanna in #2128
• 2129 update range and pattern on metagenome annotation id to allow metatranscriptome workflow activities by @aclum in #2130
• Add no-op migrators to versions 10.5.6 and 10.6.0 by @pkalita-lbl in #2135

Full Changelog: v10.5.6...v10.6.0

v10.5.6

Bugfix release due to a migrator lacking some essential functionality.

What's Changed

• Update migrator to keep DataObject.was_generated_by in sync with updated id by @eecavanna in #2088

Full Changelog: v10.5.5...v10.5.6

v10.5.5

Bugfix release due to issues integrating v10.5.4 into nmdc-runtime.

What's Changed

• Remove activity_set slot from Database class by @aclum in #2082
• Use --include-range-class-descendants flag in JSON Schema generator calls by @pkalita-lbl in #2083
• 2084 tighter pattern constraint on was_generated_by by @aclum in #2085

Full Changelog: v10.5.4...v10.5.5

v10.5.4

nmdc-schema is frozen until further notice

• Development of PRs is still allowed.
• PRs can be brought up for team review in regularly scheduled Monday and Wednesday schema/metadata meetings if the PR does not
  • change the expressiveness of the schema
  • make previously valid data invalid
  • make previously invalid data valid
• Please ask the rollout task leaders for review in advance.
  • see the Berkeley-Schema-Refactor-RollOutNotes
• We anticipate merging berkeley-schema-fy24 into this repo in October 2024, at which time the freeze will be lifted.

What's Changed

• GitHub workflow to preview documentation changes/builds with example changes by @sujaypatil96 in #2057
• Add migrator for nom_analysis_activity ID by @JamesTessmer in #2059
• Implement a "no op" migrator from v10.4.0 to v10.5.4 by @eecavanna in #2071

Full Changelog: v10.5.3...v10.5.4