Dependency updates (#1494)

* Dependency updates

* Semver

.semversioner/next-release/patch-20241210225542555031.json

@@ -0,0 +1,4 @@
+{
+  "type": "patch",
+  "description": "Dependency Updates"
+}

pyproject.toml

@@ -64,16 +64,16 @@ tiktoken = "^0.8.0"
 # Data-Sci
 numpy = "^1.25.2"
 graspologic = "^3.4.1"
-networkx = "^3"
+networkx = "^3.4.2"
 pandas = "^2.2.3"
-matplotlib = "^3.9.0"
+matplotlib = "^3.9.3"
 pyarrow = "^15.0.0"
 umap-learn = "^0.5.6"
 
 # Configuration
 pyyaml = "^6.0.2"
 pyaml-env = "^1.2.1"
-python-dotenv = "^1.0.0"
+python-dotenv = "^1.0.1"
 
 pydantic = "^2.10.3"
 rich = "^13.9.4"
@@ -94,21 +94,21 @@ tqdm = "^4.67.1"
 httpx = "^0.28.1"
 
 [tool.poetry.group.dev.dependencies]
-coverage = "^7.6.0"
-ipykernel = "^6.29.4"
+coverage = "^7.6.9"
+ipykernel = "^6.29.5"
 jupyter = "^1.1.1"
-nbconvert = "^7.16.3"
+nbconvert = "^7.16.4"
 poethepoet = "^0.31.1"
-pyright = "^1.1.384"
-pytest = "^8.3.2"
+pyright = "^1.1.390"
+pytest = "^8.3.4"
 pytest-asyncio = "^0.24.0"
 pytest-timeout = "^2.3.1"
 ruff = "^0.8.2"
-semversioner = "^2.0.3"
+semversioner = "^2.0.5"
 update-toml = "^0.2.1"
 deptry = "^0.21.1"
-mkdocs-material = "^9.5.39"
-mkdocs-jupyter = "^0.25.0"
+mkdocs-material = "^9.5.48"
+mkdocs-jupyter = "^0.25.1"
 mkdocs-exclude-search = "^0.6.6"
 pytest-dotenv = "^0.5.2"
 mkdocs-typer = "^0.0.3"