Drop support for Python 3.7 #573
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
workflow_dispatch: | |
jobs: | |
test-core: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8", "3.9"] | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: test-core (Python ${{ matrix.python-version }}) | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
mamba-version: "*" | |
channels: conda-forge,defaults | |
channel-priority: true | |
python-version: ${{ matrix.python-version }} | |
environment-file: environment.yml | |
- name: Install syntheseus | |
run: | | |
pip install .[dev] | |
- name: Run pre-commit | |
run: | | |
pre-commit run --verbose --all-files | |
- name: Run unit tests | |
run: | | |
coverage run -p -m pytest ./syntheseus/tests/ | |
coverage report --data-file .coverage.* | |
- name: Upload coverage report | |
uses: actions/upload-artifact@v4 | |
with: | |
name: .coverage.core-${{ matrix.python-version }} | |
path: .coverage.* | |
include-hidden-files: true | |
test-models: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: test-models | |
steps: | |
- name: Free extra disk space | |
uses: jlumbroso/free-disk-space@main | |
- uses: actions/checkout@v3 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
mamba-version: "*" | |
channels: conda-forge,defaults | |
channel-priority: true | |
environment-file: environment_full.yml | |
- name: Install syntheseus with all single-step models | |
run: | | |
sudo apt install graphviz | |
pip install .[all] | |
- name: Run single-step model tests | |
run: | | |
coverage run -p -m pytest \ | |
./syntheseus/tests/cli/test_cli.py \ | |
./syntheseus/tests/reaction_prediction/inference/test_models.py \ | |
./syntheseus/tests/reaction_prediction/utils/test_parallel.py | |
coverage report --data-file .coverage.* | |
- name: Upload coverage report | |
uses: actions/upload-artifact@v4 | |
with: | |
name: .coverage.models | |
path: .coverage.* | |
include-hidden-files: true | |
coverage: | |
needs: [test-core, test-models] | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.9 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install coverage | |
- uses: actions/download-artifact@v4 | |
with: | |
merge-multiple: true | |
- name: Generate a combined coverage report | |
run: | | |
coverage combine | |
coverage report |